BQ623744

Overview
NameBQ623744
Unique NameBQ623744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10244 contig Csv1_Contig10244:345..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.810e-16
Identity = 65/182 (35.71%), Postives = 87/182 (47.80%), Query Frame = 1
Query:   13 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-------LYPGGQYFDPLGLADDPVTFA---ELKVKEIKNGRLAMFSMFGFFVQAIVT 528
            +P YLTG  PGD G+D  GL+ DPE        E+++GRWAMLG  G + PEV      ++   P W+ AG +       +Y        + S L V+ F  +L   VE  R   +   G  N          P G+   P G+  +P+ FA   E K KEI NGRLAM +  GF +Q  VT
Sbjct:   62 SPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINV--PKWYAAGKE-------EYFA------SSSTLFVIEF--ILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIF-NPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVT 225          

HSP 2 Score: 21.1718 bits (43), Expect = 2.810e-16
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 2
Query:  533 KVPLENLLDHLENP 574
            K P +NLL H+ +P
Sbjct:  227 KGPFDNLLQHISDP 240          
BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.459e-15
Identity = 59/144 (40.97%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   97 RNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 528
            R R  E+IHGRWAMLG LG I  E L            W  AG     EG   YLG P      S+  ++  +V+++G +E  R + L        +YPGG YFDPLGLA DP     LK+ EIK+ RLAM +   F +QA  T
Sbjct:  136 RFRECELIHGRWAMLGTLGAIAVEALTGI--------AWQDAGKVELVEGS-SYLGQPLPF---SLTTLIWIEVLVVGYIEFQRNSELD---PEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFT 263          
BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14
Identity = 64/179 (35.75%), Postives = 84/179 (46.93%), Query Frame = 1
Query:    7 AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGL---VEGFRING--LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 528
            AQ P++LTGE+P D G+D   ++ADP  +AR R  EV H R +ML  +G I PE+L K          WF+ G  +    G+                 LGF  +LM +    E +R NG      G  +  YPG   FDPL L  D         +EIKNGRLAM  + G   Q + T
Sbjct:  166 AQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK--------GAWFEVGNSV---DGIK----------------LGF--ILMAIAAPTEYWRGNGGFNWDKGTADRSYPG---FDPLKLTTD------YTKREIKNGRLAMTGLLGLTFQYLAT 306          
BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.095e-14
Identity = 62/185 (33.51%), Postives = 81/185 (43.78%), Query Frame = 1
Query:   10 QTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEK--------WLRVDFKEPVWFKAGAQIFSEGGLDY--------LGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 516
            Q+P+YL G   GD G+D   L+ DPE        +V++GRWAMLG  G + PEVL K        WLR+  KE  +  +   +       Y        + NP  V+   I                F+   LP    G   YP G+ F+PL  A       E K KE+ NGRLAM +  GF VQ
Sbjct:   41 QSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPI----------------FKSYSLPPHECG---YP-GRVFNPLNFAP-----LENKEKELANGRLAMLAFLGFLVQ 200          

HSP 2 Score: 20.7866 bits (42), Expect = 4.095e-14
Identity = 11/25 (44.00%), Postives = 13/25 (52.00%), Query Frame = 2
Query:  500 LGSLSKLL*QAKVPLENLLDHLENP 574
            LG L +     K P ENL  HL +P
Sbjct:  195 LGFLVQHNVHGKGPFENLQQHLADP 219          
BLAST of BQ623744 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 9.636e-12
Identity = 68/217 (31.34%), Postives = 84/217 (38.71%), Query Frame = 1
Query:   16 PSYLTGEFPGDYGWDTAGLSADPE---------------------------------------------AFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLA-DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 528
            P +L G  PGD G+D  GLS   E                                               AR R  E+IHGRWAML  LG +  E              W +AG       G  Y G   L    SI  ++  +V+L+G  E +R +           YPGG  FDPL LA +D      LK  EIK+ RLAM S FG+ VQA+ T
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTG--------VSWVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYRNSE---TNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALST 259          
The following BLAST results are available for this feature:
BLAST of BQ623744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB24_PEA2.810e-1635.71Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB4C_ARATH5.459e-1540.97Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
LH15_EUGGR1.588e-1435.75Light-harvesting complex I LH35 proteins (Fragment... [more]
CB120_HORVU4.095e-1433.51Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB29_CHLRE9.636e-1231.34Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00835 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00835 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623744 ID=BQ623744; Name=BQ623744; organism=Citrus sinensis; type=EST; length=597bp
TTTTCAGCACAGACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTA
TGGATGGGACACTGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGA
ACAGGGCTCTTGAGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTA
GGCTGCATCACCCCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAA
GGAACCGGTTTGGTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCC
TTGACTACTTGGGAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCT
GTCCTGGGATTCCAGGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTAT
CAATGGCCTCCCTGGTGTCGGAGAAGGAAACGACCTCTACCCTGGTGGCC
AATATTTTGATCCCCTTGGCCTTGCTGATGATCCTGTTACGTTTGCTGAA
CTCAAGGTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTTCCATGTT
TGGGTTCTTTGTCCAAGCTATTGTGACAGGCAAAGGTCCCCTTGGAAAAC
CTCCTGGACCACCTTGAAAACCCTGTTGCCACAATGCTTGGGTCTAT
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