BQ623745

Overview
NameBQ623745
Unique NameBQ623745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:462..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.428e-15
Identity = 44/142 (30.99%), Postives = 73/142 (51.41%), Query Frame = 2
Query:   26 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSR 451
            V+V++K I D  Q YTQ+  +RP G   ++  +D++  PRLF+ DP+G    +KAT+ G      +   E   K D     +  +   +  L    +  F A  +EVGVVS ++ +FR L  EE+  ++  I E+  E  ++
Sbjct:  108 VEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDK-RPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKED--MNIEAAILLGMDALYKAAEGKFDAGTLEVGVVSLQDKKFRKLEPEEVGNYVQQILEKHKETENK 246          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.096e-14
Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = 2
Query:   26 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            V+V++K I D  Q YTQ+  +RP G   ++  +D+   PRLF+ DP+G    +KAT+ G      +   E   + D        +   +  L    +  F A  +EVGVVS E+ +FR L  EE++ ++  I E+
Sbjct:  110 VEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDN-KPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYRED--MNIDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYVHQILEK 241          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.443e-14
Identity = 42/138 (30.43%), Postives = 79/138 (57.25%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            YG   PV V+ K I D  Q++TQ+  +RP G   ++  I++   P L++ DP+G +F  KA + G     A+   E+K ++D     ++ ++ A+  L   + E+  A  IEV V++ ++ +FR L+ +EI+++L+ +
Sbjct:  105 YGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDD--MNLEDAIKLALMALAKTM-ENPSADNIEVAVITVKDKKFRKLTRDEIEKYLSEV 237          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.443e-14
Identity = 44/135 (32.59%), Postives = 76/135 (56.30%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            YG   P+ V+ K I D  Q++TQ+  +RP G   ++  ++++  P L++ DP+G +F  KA + G     A+   E K ++D   T  E ++ AI  L   +++   A  IEV V++ ++ +FR LS EEI++ L
Sbjct:  105 YGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDK--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDD--MTLDEAIKLAIFALAKTMEKP-SAENIEVAVITVKDKKFRKLSKEEIEKFL 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.443e-14
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            Y   +PV  L +  A   Q +TQ   +RP GV  +V   D++ GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   + +  +  IE+G +  +   FRVL+  EID++L  +
Sbjct:  101 YKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGFEGEISSKNIEIGKIGTDK-VFRVLTPAEIDDYLAEV 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.443e-14
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            Y   +PV  L +  A   Q +TQ   +RP GV  +V   D++ GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   + +  +  IE+G +  +   FRVL+  EID++L  +
Sbjct:  101 YKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGFEGEISSKNIEIGKIGADK-VFRVLTPAEIDDYLAEV 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.190e-14
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            YG  + ++ L K +AD+ Q YTQ+  +RP GV  +   ID+  GPRLF CDPAG    +KAT+ G  +   ++FLEK+ K     + +E V   I  L++ L+  E+ KA EI    V     ++R+   EE+ + L
Sbjct:  103 YGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKE--GLSEKEAVTLGIKALKASLEEGEELKAPEIASITVGS---KYRIYGAEEVKKFL 233          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.190e-14
Identity = 42/131 (32.06%), Postives = 76/131 (58.02%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEI 400
            YG  +P+ VL K I D  Q++TQ+  +RP G   ++  ++E+  P LF+ DP+G +F  KA + G     A+   E+K +++   T +E ++ A+  L  +++E    S IEV V+S +  +F+ ++ EE+
Sbjct:  105 YGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK--PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDE--MTLEEAIKLAVLALSKIMEEPSPES-IEVAVISVKEKKFKKITPEEV 230          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.190e-14
Identity = 47/135 (34.81%), Postives = 76/135 (56.30%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            YG  + ++ L K +AD+ Q YTQ+  +RP GV  +   ID+  GPRLF CDPAG    +KAT+ G  +   ++FLE++ K +     +E V   I  L+S L+E  +    E+  ++  N ++R+   EE+ + L
Sbjct:  103 YGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKEN--LPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGN-KYRIYDQEEVKKFL 233          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.190e-14
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   +    A+ IE+G++ + + EF+VLS  EI + L  +
Sbjct:  101 YKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGYEGQISANNIEIGII-RSDREFKVLSPAEIKDFLEEV 234          
The following BLAST results are available for this feature:
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PSMA_METTE6.428e-1530.99Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METMA1.096e-1431.85Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_PYRFU2.443e-1430.43Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_PYRAB2.443e-1432.59Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSA2B_ARATH2.443e-1433.33Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH2.443e-1433.33Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSMA_THEVO3.190e-1436.50Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_THESM3.190e-1432.06Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_THEAC3.190e-1434.81Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSA2_ORYSJ3.190e-1433.33Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00836 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00836 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623745 ID=BQ623745; Name=BQ623745; organism=Citrus sinensis; type=EST; length=507bp
CTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTG
CAGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGT
GTAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTT
TAAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTG
GATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAAT
GATCCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCT
GCAATCAGTCCTGCAAGAGGATTTTAAGGCGAGTGAGATTGAGGTTGGCG
TGGTGAGCAAGGAGAATCCAGAATTCAGAGTTTTGTCCATCGAGGAGATC
GATGAGCACTTGACTGCTATAAGTGAACGAGATTAGGAGGTGGTTTCACG
CCCCATCATAAATGCTGAAACCAAAAAACAAAAATGCTTTTCCCTGTATC
TTGAATT
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