BQ623745

Overview
NameBQ623745
Unique NameBQ623745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:462..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.190e-14
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            Y   +PV  L +  A   Q +TQ   +RP GV  ++   D+  GP+L++ DP+G +F  KA++ G     A  FLEK+   D      + + TAI TL+   +    A+ IE+G++ + + EF+VLS  EI + L  +
Sbjct:  101 YKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDN-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED--MELDDAIHTAILTLKEGYEGQISANNIEIGII-RSDREFKVLSPAEIKDFLEEV 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            YG  M ++ L K +AD+ Q YTQ+  +RP GV  +   +D   GPRLF CDPAG    +K  S G  + +   +LEK+ K +   +  E ++  I+ L+S + ++    E E+  + K    F V + EE+ ++L
Sbjct:  103 YGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLDS-IGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKEN--LSEDEAIRMGIAALKSAVADESSMKEPEIASI-KMGETFHVFTSEEVSKYL 233          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 43/136 (31.62%), Postives = 77/136 (56.62%), Query Frame = 2
Query:    5 KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            +Y  ++PV  L + +A   Q +TQ   +RP GV  +V   DE+ GP L++ DP+G +F  KAT+ G     +  FLEK+  +D     ++ +QTA+ T++   +       +E+ ++ K N EF++L+  +I ++L
Sbjct:   98 QYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEK-GPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDD--LEIEDAIQTALITIKEGFETQLTEFNMELAIIGK-NQEFKILTPAQIKDYL 229          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.107e-14
Identity = 44/148 (29.73%), Postives = 80/148 (54.05%), Query Frame = 2
Query:   14 YEMPVDV--LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSR 451
            Y+ P+ V  LAK I D  Q YTQ+  +RP GV  ++  +DE   P+L++ DP+G    +KAT+ G+       F EK+ ++D   +F + +   +  +   ++ +     IEVG V  ++  F+ +S EE+  ++   +ER  E++ +
Sbjct:  103 YDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEV--PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDD--LSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-14
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   11 GYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 484
            G  + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   +D   T   T++  I  L  V+Q   K   IE+ V+ ++ P  ++LS EEI++++  I +   E         E KKQK
Sbjct:  105 GDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILSPEEIEKYVAEIEKEKEE--------NEKKKQK 251          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.583e-13
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            Y   + +D L K I+D  Q+YTQH  +RP GV  +V  +D     +LF  +P+G F  ++A + G     A ++LEK  K D   + +ET+  A++ L+  L+  E      +E+G  +KE  +FR +++EE   +L  I
Sbjct:  105 YDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGV-TKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKED--LSVEETILLALNALKVTLKPGEKLGPGNVEIGFATKEG-QFRKMTLEERANYLQKI 240          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D   T  E ++ A+  L S   E+ K   I++ ++         +S++EI++ + A+ E+
Sbjct:  105 YGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKY--DENMTVSEGMELALYAL-SKTTEELKPENIDMAIIKDSGKLVEKISVDEIEKIVKAVYEK 241          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D   T  E ++ A+  L S   E+ K   I++ +V         +S++EI++ + A+ ++
Sbjct:  105 YGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSED--MTVNEGMELALYAL-SKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIVKAVYKK 241          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+  E    + +E+G  S +   F  ++ E+ + +L
Sbjct:  105 YDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGLFLKMTSEDKNMYL 238          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+  E    + +E+G  S +   F  ++ E+ + +L
Sbjct:  105 YDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGLFLKMTSEDKNMYL 238          
The following BLAST results are available for this feature:
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PSA2_ORYSI3.190e-1433.33Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_PICTO4.166e-1433.33Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA2_DICDI4.166e-1431.62Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_ARCFU7.107e-1429.73Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSA7_RAT9.282e-1431.65Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSMA_METS51.583e-1332.86Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_METMP2.068e-1332.62Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM52.068e-1332.62Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULIY2.701e-1330.66Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN2.701e-1330.66Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00836 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00836 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623745 ID=BQ623745; Name=BQ623745; organism=Citrus sinensis; type=EST; length=507bp
CTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTG
CAGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGT
GTAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTT
TAAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTG
GATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAAT
GATCCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCT
GCAATCAGTCCTGCAAGAGGATTTTAAGGCGAGTGAGATTGAGGTTGGCG
TGGTGAGCAAGGAGAATCCAGAATTCAGAGTTTTGTCCATCGAGGAGATC
GATGAGCACTTGACTGCTATAAGTGAACGAGATTAGGAGGTGGTTTCACG
CCCCATCATAAATGCTGAAACCAAAAAACAAAAATGCTTTTCCCTGTATC
TTGAATT
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