BQ623745

Overview
NameBQ623745
Unique NameBQ623745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:462..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 46/136 (33.82%), Postives = 68/136 (50.00%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 412
            YG EMP   L   IA   Q YTQ   +RP G   ++   D+  G P LF+CDP+G +F  KAT+ G  +  A  FLEK+     A    + + TA+ TL+         + +EV V +     F  L+ +++ +HL
Sbjct:   97 YGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE--ALELDDGIHTALLTLRESFDVGMNENNVEVAVCNSTG--FHRLTKQQVHDHL 228          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 44/140 (31.43%), Postives = 79/140 (56.43%), Query Frame = 2
Query:    2 FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ-EDFKASEIEVGVVSKEN----PEFRVLSIEEIDE 406
            F Y   +PV  LA  +ADK+QV TQ ++ RP GV  +V  +DE  G  L+   P+G++F ++A + G + Q A  FLE++ +    +T ++ ++ A+S ++  LQ E   +S   V +V +++      F ++ ++ I E
Sbjct:   97 FVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQE 235          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.607e-13
Identity = 46/141 (32.62%), Postives = 72/141 (51.06%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D   T  E ++ A+  L S   E+ K   I++ +V         +S++EI++ + A+ ++
Sbjct:  105 YGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKY--DENMTVNEGMELALYAL-SKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIVKAVYKK 241          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 2
Query:   14 YEMPVDV--LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 421
            Y+ P+ +  L K I+D  Q YTQH  +RP GV  +V  ID+   P+L   +P+G F  + A + G     A  +LEK  K D     Q T+  A+  L + L+  E    S +E+G    ++  F+ L+ EE  + L  I
Sbjct:  105 YDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKED--LDIQSTILLALRALMATLKPGEKLNYSSVEIGYADVDSGTFKKLTTEERSDLLQKI 242          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.026e-12
Identity = 39/149 (26.17%), Postives = 78/149 (52.35%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE---------IEVGVVSKENPEFRVLSIEEIDEHLTAISE 427
            YG   PV+++AK +AD  Q YTQH  +RP GV  +   ++ +   ++++ DP G +F  KA + G  EQ A    EK  ++D   + +E  + A+  L +++++  +  E         +E+  ++ +   F  ++ E++ E + ++ E
Sbjct:  107 YGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSD--MSLEEATKLALKILYAIIRKTVEDKEKAIATLPDQVELAYITVKERMFTKMTKEQVKEIVDSMRE 253          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.026e-12
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 2
Query:   26 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 484
            V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q   K   IE+ V+ ++ P  ++L+ EEI++++  I +   E         E KKQK
Sbjct:  104 VEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIEKYVAEIEKEKEE--------NEKKKQK 245          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.026e-12
Identity = 46/161 (28.57%), Postives = 84/161 (52.17%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPE--FRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 484
            YG EMPV+ L + + ++ Q YTQ    RP GV  + +  D+  G +L++ DP+G++ G KAT  G   Q A+  L+++ K+      +E  Q AI  L   L     + ++E+ V+++ + +     L+ +E+D  +    +++ E        AET ++K
Sbjct:  101 YGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP---NLEEAKQLAIKVLWKTLDVKLASEKVEMAVLTRRDGKTVLEELTTKEVDALIAEHEKKEKE--------AETAEKK 250          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.026e-12
Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPE--------------FRVLSIEEIDEHLTAI 421
            YG   P  +L   +A   Q  TQ   +RP GV  ++   DE  G  L++ DP+G +F  KAT+ G     A  FLEK+  ++     ++ +  A+ TL+  ++ +F    IE+ ++  ENP+              FR L+ +EI++ L A+
Sbjct:  101 YGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDE--LELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.750e-12
Identity = 42/137 (30.66%), Postives = 74/137 (54.01%), Query Frame = 2
Query:   26 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS-ERD 433
            V+ + ++IA   Q YTQ    RP G+ A+++  D++  PRL++ DP+G +   KA + G   +    FLEK    D     +E ++ AI  L  V+Q   K   IE+ ++ ++ P  ++ S +EI+  ++ I  E+D
Sbjct:  106 VEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGK--NIELAIIRRDQP-LKMFSAKEIELEVSEIEREKD 239          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.750e-12
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   26 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 484
            V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q   K   IE+ V+ ++ P  ++L+ EEI+ ++  I +   E         E KKQK
Sbjct:  104 VEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILNPEEIERYVAEIEKEKEE--------NEKKKQK 245          
The following BLAST results are available for this feature:
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PSA2_CAEEL3.527e-1333.82Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA1_ORYSJ3.527e-1331.43Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSMA_METM74.607e-1332.62Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULAC6.016e-1332.86Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_AERPE1.026e-1226.17Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA7_BOVIN1.026e-1230.72Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA4_CAEEL1.026e-1228.57Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA2_YEAST1.026e-1229.61Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA7L_MOUSE1.750e-1230.66Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7B_XENLA1.750e-1230.72Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00836 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00836 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623745 ID=BQ623745; Name=BQ623745; organism=Citrus sinensis; type=EST; length=507bp
CTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTG
CAGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGT
GTAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTT
TAAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTG
GATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAAT
GATCCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCT
GCAATCAGTCCTGCAAGAGGATTTTAAGGCGAGTGAGATTGAGGTTGGCG
TGGTGAGCAAGGAGAATCCAGAATTCAGAGTTTTGTCCATCGAGGAGATC
GATGAGCACTTGACTGCTATAAGTGAACGAGATTAGGAGGTGGTTTCACG
CCCCATCATAAATGCTGAAACCAAAAAACAAAAATGCTTTTCCCTGTATC
TTGAATT
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