BQ623745

Overview
NameBQ623745
Unique NameBQ623745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:462..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 45/139 (32.37%), Postives = 70/139 (50.36%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 424
            Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:  101 YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVRDYLAAIA 234          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 42/140 (30.00%), Postives = 72/140 (51.43%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 427
            YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++E+  P L++ DP+G +F  KA + G     A+   E+   +D     +  ++ AI  L   L+E    S IEV  ++ +   ++ L  EE+ ++L  I E
Sbjct:  105 YGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDD--IDMEGAIKLAILALAKTLEEPSPES-IEVAYITLDEKRWKKLDKEEVAKYLNEILE 239          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 48/164 (29.27%), Postives = 83/164 (50.61%), Query Frame = 2
Query:    2 FKYGYEMPVDV--LAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEF--RVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQ 481
            +K   E PV V  ++++IA+  Q +TQ    RP G+  ++   D +  PRLFK +P+G ++ + A + G  E+    +LE++   +       T++  + +L  V+     +  IE+ V+ K N E   RVLS EEI+  L  +     E V+     A +KK+
Sbjct:   95 YKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPG--SQNIEIAVMKKVNDELQQRVLSTEEIEALLKVVET---ERVAAEAEEAASKKK 253          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 2
Query:    2 FKYGYEMPVDVLAKWIADKSQVYTQHA-----YMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 427
            F Y   + V+V+A+ I+D S  + + +       RP GV  ++  +DE  GPRLF+ DP+G F    A + G   + A + L +K     + T +E    A+STL+ V++E   +  +EV +V+ E  +F ++    I+  +  I E
Sbjct:  101 FMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDET-GPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNK--SMTLREAEILALSTLKQVMEEKLNSKNVEVALVTVEKKKFEIMDTAFIENLIGEIKE 244          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.935e-11
Identity = 47/127 (37.01%), Postives = 65/127 (51.18%), Query Frame = 2
Query:   26 VDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEID 403
            V+ + ++IA   Q YTQ   +RP G+  +++  D   G P L++ DP+G F   KA + G        FLEK  K       QETV+ AI  L  V++   K   IEV V++KEN   R L   EID
Sbjct:  105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFKETSG---QETVKLAIRALLEVVESGGK--NIEVAVMTKEN-GLRQLEEAEID 225          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = 2
Query:    2 FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            F +   +PV  L   I  K+Q+ TQ    RP GV  ++   D+  GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   97 FVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLDGLEER 239          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = 2
Query:    2 FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            F +   +PV  L   I  K+Q+ TQ    RP GV  ++   D+  GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   97 FVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLEGLEER 239          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = 2
Query:    2 FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            F +   +PV  L   I  K+Q+ TQ    RP GV  ++   D+  GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   97 FVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLEGLEER 239          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.528e-11
Identity = 40/145 (27.59%), Postives = 70/145 (48.28%), Query Frame = 2
Query:    2 FKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 430
            F +   +PV  L   I  K+Q+ TQ    RP GV  ++   D+  GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   97 FVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLEGLEER 239          
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 47/159 (29.56%), Postives = 77/159 (48.43%), Query Frame = 2
Query:    8 YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 484
            YG  + V+ LAK I D  Q YT H   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE+K   D   +  E ++ AI  L S   E+ K   I++ +V         +++ EI++ +  + ++        + N E +K+K
Sbjct:  105 YGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPVAMEILEEKY--DENMSVSEGMELAIYAL-SKTTEELKPENIDMAIVKDTGKLVEKITVFEIEKIVKKVYDK------IKVENEEAEKKK 253          
The following BLAST results are available for this feature:
BLAST of BQ623745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PSA2_MOUSE1.135e-1132.37Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSMA_THEGJ1.482e-1130.00Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSA7_CAEEL1.482e-1129.27Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA5_ENTHI1.482e-1129.93Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA7_CICAR1.935e-1137.01Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA1_MOUSE2.528e-1127.59Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_MACFA2.528e-1127.59Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN2.528e-1127.59Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN2.528e-1127.59Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSMA_METVS3.301e-1129.56Proteasome subunit alpha OS=Methanococcus vannieli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00836 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00836 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623745 ID=BQ623745; Name=BQ623745; organism=Citrus sinensis; type=EST; length=507bp
CTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTG
CAGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGT
GTAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTT
TAAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTG
GATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAAT
GATCCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCT
GCAATCAGTCCTGCAAGAGGATTTTAAGGCGAGTGAGATTGAGGTTGGCG
TGGTGAGCAAGGAGAATCCAGAATTCAGAGTTTTGTCCATCGAGGAGATC
GATGAGCACTTGACTGCTATAAGTGAACGAGATTAGGAGGTGGTTTCACG
CCCCATCATAAATGCTGAAACCAAAAAACAAAAATGCTTTTCCCTGTATC
TTGAATT
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