BQ623746

Overview
NameBQ623746
Unique NameBQ623746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1015..1600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK3_POPTR (S-adenosylmethionine synthetase 3 OS=Populus trichocarpa GN=METK3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.288e-56
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 3
Query:  120 TGFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 401
            +G ARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  297 SGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKESFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          

HSP 2 Score: 53.5286 bits (127), Expect = 3.288e-56
Identity = 28/42 (66.67%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKSIVA+GL
Sbjct:  258 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 299          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 4.286e-56
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 3
Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 413
            G ARRC+VQVSYAIGVPEPLSVFVDSYGTG IPDKEIL+++KE+FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKW+K QA
Sbjct:  297 GLARRCLVQVSYAIGVPEPLSVFVDSYGTGSIPDKEILELIKENFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWDKAQA 393          

HSP 2 Score: 52.373 bits (124), Expect = 4.286e-56
Identity = 28/42 (66.67%), Postives = 28/42 (66.67%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKSIVA GL
Sbjct:  257 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVAAGL 298          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 5.588e-56
Identity = 87/98 (88.78%), Postives = 94/98 (95.92%), Query Frame = 3
Query:  120 TGFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 413
            +G ARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGR+DPDFTWEVVKPLK+EK +A
Sbjct:  296 SGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKFEKVEA 393          

HSP 2 Score: 53.5286 bits (127), Expect = 5.588e-56
Identity = 28/42 (66.67%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKSIVA+GL
Sbjct:  257 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK2_BRAJU (S-adenosylmethionine synthetase 2 OS=Brassica juncea GN=MSAMS2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 7.285e-56
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 3
Query:  120 TGFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 413
            +G ARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK  K QA
Sbjct:  296 SGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393          

HSP 2 Score: 53.5286 bits (127), Expect = 7.285e-56
Identity = 28/42 (66.67%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKSIVA+GL
Sbjct:  257 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.238e-55
Identity = 84/97 (86.60%), Postives = 92/97 (94.85%), Query Frame = 3
Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 413
            G ARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EIL+IV E+FDFRPGM+ INLDL RGGNGR+LKTAAYGHFGR+DPDFTWEVVKPLKWE+P A
Sbjct:  300 GLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGNGRYLKTAAYGHFGREDPDFTWEVVKPLKWEEPSA 396          

HSP 2 Score: 53.9138 bits (128), Expect = 1.238e-55
Identity = 28/42 (66.67%), Postives = 28/42 (66.67%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYI RQAAKSIVANGL
Sbjct:  260 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVANGL 301          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_POPDE (S-adenosylmethionine synthetase OS=Populus deltoides GN=METK PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.238e-55
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 3
Query:  120 TGFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 401
            +G ARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKE FDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKW+
Sbjct:  297 SGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKERFDFRPGMISINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWD 390          

HSP 2 Score: 53.5286 bits (127), Expect = 1.238e-55
Identity = 28/42 (66.67%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKSIVA+GL
Sbjct:  258 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 299          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK3_PETHY (S-adenosylmethionine synthetase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.614e-55
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 3
Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 410
            G ARRCIVQVSYAIGVPEPLSVFVD+YGTG IPDKEILKIVKE+FDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK EK Q
Sbjct:  297 GLARRCIVQVSYAIGVPEPLSVFVDTYGTGMIPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDTDFTWEVVKPLKCEKAQ 392          

HSP 2 Score: 55.0694 bits (131), Expect = 1.614e-55
Identity = 28/42 (66.67%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKS+VANGL
Sbjct:  257 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGL 298          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.614e-55
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 413
            G ARRCIVQVSYAIGVPEPLS+FVD+YGTG IPDKEIL+I+KE FDFRPGM++INLDLKRGGNGR  KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  297 GLARRCIVQVSYAIGVPEPLSLFVDTYGTGSIPDKEILEIIKEHFDFRPGMISINLDLKRGGNGRSQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          

HSP 2 Score: 55.4546 bits (132), Expect = 1.614e-55
Identity = 29/42 (69.05%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKSIVANGL
Sbjct:  257 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.743e-55
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 3
Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 413
            G ARR IVQVSYAIGVPEPLSVFVD+YGTGKIPDK+ILKIVKE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VKPLKWEK  A
Sbjct:  297 GLARRAIVQVSYAIGVPEPLSVFVDTYGTGKIPDKDILKIVKENFDFRPGMISINLDLKRGGNARFQKTAAYGHFGRDDPDFTWETVKPLKWEKVPA 393          

HSP 2 Score: 55.4546 bits (132), Expect = 2.743e-55
Identity = 29/42 (69.05%), Postives = 29/42 (69.05%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYIVRQAAKSIVANGL
Sbjct:  257 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298          
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.576e-55
Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 3
Query:  120 TGFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 413
            +G ARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL+IVKE+FDFRPGM+ INLDLKRGG+GR+LKTAAYGHFGRD  DFTWEVVKPLKWEKP A
Sbjct:  299 SGIARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILEIVKENFDFRPGMIIINLDLKRGGSGRYLKTAAYGHFGRDGADFTWEVVKPLKWEKPSA 396          

HSP 2 Score: 51.2174 bits (121), Expect = 3.576e-55
Identity = 26/42 (61.90%), Postives = 28/42 (66.67%), Query Frame = 2
Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGL 127
            DTY             KDPTKVDRSGAYI RQAAKSIVA+G+
Sbjct:  260 DTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVASGI 301          
The following BLAST results are available for this feature:
BLAST of BQ623746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_POPTR3.288e-5691.49S-adenosylmethionine synthetase 3 OS=Populus trich... [more]
METK2_PICSI4.286e-5687.63S-adenosylmethionine synthetase 2 OS=Picea sitchen... [more]
METK2_CATRO5.588e-5688.78S-adenosylmethionine synthetase 2 OS=Catharanthus ... [more]
METK2_BRAJU7.285e-5690.82S-adenosylmethionine synthetase 2 OS=Brassica junc... [more]
METK3_ORYSJ1.238e-5586.60S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK_POPDE1.238e-5590.43S-adenosylmethionine synthetase OS=Populus deltoid... [more]
METK3_PETHY1.614e-5590.63S-adenosylmethionine synthetase 3 OS=Petunia hybri... [more]
METK_PINBN1.614e-5586.60S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK2_SUASA2.743e-5587.63S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK4_HORVU3.576e-5587.76S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00837 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00837 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623746 ID=BQ623746; Name=BQ623746; organism=Citrus sinensis; type=EST; length=587bp
GGACACTTATGGTGGCTGGGGAGCCCATGGTGGCGGTGCTTTCTCTGGAA
AAGACCCTACTAAGGTGGATAGGAGTGGTGCATACATTGTTAGGCAGGCT
GCTAAGAGCATTGTTGCAAACGGGCTTTGCTCGCAGGTGCATTGTCCAAG
TCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTGTTTTTGTGGACTCA
TATGGAACCGGCAAGATTCCTGACAAGGAGATCCTCAAAATTGTGAAGGA
AAGCTTTGATTTCAGGCCAGGAATGATGACCATCAATTTGGATCTCAAAA
GGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCTATGGACACTTTGGC
AGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAGCCCCTCAAGTGGGA
AAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAAACTATCCCTGCTGT
TCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTTGAATATTATCTTGC
TGCTGCTTTGTAATACTAAGCAAATCTCCTGGGTTCAAAACTCATACATG
TTCCCCATTCAATTCCCTTTCTTATTCTTCTTTCCCC
back to top