BQ623746 | Citrus Genome Database

Overview


Name	BQ623746
Unique Name	BQ623746
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	587

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1234	contig	Csv1_Contig1234:1015..1600.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_ENTFA (S-adenosylmethionine synthetase OS=Enterococcus faecalis GN=metK PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.833e-20
Identity = 36/85 (42.35%), Postives = 60/85 (70.59%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A++  VQ++YAIGV +P+S+ ++++GT  +P+ ++++ V+++FD RP  +   LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  299 GLAKKVEVQLAYAIGVAQPVSISINTFGTSDLPESKLIEAVRKNFDLRPAGIIEMLDLRR---PIYKQTAAYGHFGRTDIDLPWE 380

HSP 2 Score: 38.891 bits (89), Expect = 2.833e-20
Identity = 21/46 (45.65%), Postives = 24/46 (52.17%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQV 139
            DTY             KD TKVDRS +Y  R  AK+IVA GL  +V
Sbjct:  259 DTYGGYARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGLAKKV 304

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_OENOB (S-adenosylmethionine synthetase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=metK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.834e-20
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A +  +QV YAIGV  P+S+ +D++GT K+   +I  IV + FDFRP  +   LDL+R     +L+TAA+GHFGR D D  WE
Sbjct:  293 GLADKLEIQVGYAIGVARPVSIDLDTFGTEKVSIDKIYSIVDQVFDFRPLSIINQLDLRR---PIYLQTAAFGHFGRSDLDLPWE 374

HSP 2 Score: 40.817 bits (94), Expect = 2.834e-20
Identity = 21/46 (45.65%), Postives = 25/46 (54.35%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQV 139
            DTY             KD TKVDRSGAY  R  AK++VA GL  ++
Sbjct:  253 DTYGGAAHHGGGAFSGKDATKVDRSGAYYARYVAKNLVAAGLADKL 298

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_SODGM (S-adenosylmethionine synthetase OS=Sodalis glossinidius (strain morsitans) GN=metK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.835e-20
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A RC +QVSYAIGV EP S+ ++++GT KIP   +  +V+E FD RP  +   LDL +     + +TAAYGHFGR+   F WE
Sbjct:  290 GLAERCEIQVSYAIGVAEPTSITIETFGTEKIPADNLTALVREFFDLRPHGLITMLDLLQ---PIYRETAAYGHFGRE--HFPWE 369

HSP 2 Score: 40.4318 bits (93), Expect = 2.835e-20
Identity = 21/45 (46.67%), Postives = 24/45 (53.33%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQ 136
            DTY             KDP+KVDRS AY  R  AK+IVA GL  +
Sbjct:  250 DTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLAER 294

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_SERP5 (S-adenosylmethionine synthetase OS=Serratia proteamaculans (strain 568) GN=metK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.835e-20
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A RC +QVSYAIGV EP S+ V+++GT KIP +++  +V+E FD RP  +   +DL +     + +TAAYGHFGR+   F WE
Sbjct:  290 GLADRCEIQVSYAIGVAEPTSIMVETFGTEKIPTEQLTLLVREFFDLRPYGLIQMMDLLQ---PIYRETAAYGHFGRE--HFPWE 369

HSP 2 Score: 40.4318 bits (93), Expect = 2.835e-20
Identity = 21/45 (46.67%), Postives = 24/45 (53.33%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQ 136
            DTY             KDP+KVDRS AY  R  AK+IVA GL  +
Sbjct:  250 DTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADR 294

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_ENT38 (S-adenosylmethionine synthetase OS=Enterobacter sp. (strain 638) GN=metK PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.835e-20
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A RC +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  290 GLADRCEIQVSYAIGVAEPTSIMVETFGTEKLPTEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369

HSP 2 Score: 40.4318 bits (93), Expect = 2.835e-20
Identity = 21/45 (46.67%), Postives = 24/45 (53.33%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQ 136
            DTY             KDP+KVDRS AY  R  AK+IVA GL  +
Sbjct:  250 DTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADR 294

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_SULNB (S-adenosylmethionine synthetase OS=Sulfurovum sp. (strain NBC37-1) GN=metK PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.835e-20
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 383
            G   +  +QV+YAIGV +P+S++VD++GT  I +++I+  V+  FD  P  +  +LDL +     + KTAAYGHFGR+D  F+WE +
Sbjct:  291 GACDKATLQVAYAIGVAKPVSIYVDTHGTAHIDEEKIVSCVESLFDLTPKGIIDSLDLLK---PIYKKTAAYGHFGREDMGFSWEKI 374

HSP 2 Score: 42.743 bits (99), Expect = 2.835e-20
Identity = 21/45 (46.67%), Postives = 24/45 (53.33%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQ 136
            DTY             KDPTKVDRS AY  R  AK++VA G C +
Sbjct:  251 DTYGGSCPHGGGAFSGKDPTKVDRSAAYAARYVAKNLVAAGACDK 295

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_PROMP (S-adenosylmethionine synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=metK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.681e-20
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 3

Query:  129 ARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDL----KRGGNGRFLKTAAYGHFGRDDPDFTWEVVK 386
            A++  VQ+SYAIGV +P+S+ V+++GTG I    + +++K +FD RP  +    DL    K+ G   F KTA+YGHFGR+D +  WE V+
Sbjct:  310 AKKAEVQLSYAIGVAKPISILVETFGTGIISQDNLKELIKNNFDLRPAAIIKEFDLRNLPKKMGGEFFRKTASYGHFGRNDLNLPWERVE 399

HSP 2 Score: 38.1206 bits (87), Expect = 3.681e-20
Identity = 20/38 (52.63%), Postives = 20/38 (52.63%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIV 115
            DTY             KDPTKVDRS AY  R  AKSIV
Sbjct:  268 DTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKSIV 305

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_CLONN (S-adenosylmethionine synthetase OS=Clostridium novyi (strain NT) GN=metK PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.686e-20
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A +  + ++YAIGV  P+S+ V+++GT KI D +I+ IV + FD RPG +  +L+LKR     + +TAAYGHFGR D +  WE
Sbjct:  298 GVADKIEIGLAYAIGVARPVSLLVNTFGTEKIEDSKIVDIVNKVFDLRPGAIIRDLELKR---PIYRQTAAYGHFGRTDVELPWE 379

HSP 2 Score: 40.817 bits (94), Expect = 3.686e-20
Identity = 20/46 (43.48%), Postives = 25/46 (54.35%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQV 139
            DTY             KDPTKVDRS AY  R  AK++VA G+  ++
Sbjct:  258 DTYGGSGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGVADKI 303

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_YERPY (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=metK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.687e-20
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  290 GLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369

HSP 2 Score: 40.4318 bits (93), Expect = 3.687e-20
Identity = 21/45 (46.67%), Postives = 24/45 (53.33%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQ 136
            DTY             KDP+KVDRS AY  R  AK+IVA GL  +
Sbjct:  250 DTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADR 294

[Close]

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Match: METK_YERPS (S-adenosylmethionine synthetase OS=Yersinia pseudotuberculosis GN=metK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.687e-20
Identity = 42/85 (49.41%), Postives = 56/85 (65.88%), Query Frame = 3

Query:  123 GFARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 377
            G A RC +QVSYAIGV EP S+ V+++GT KIP  ++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  290 GLADRCEIQVSYAIGVAEPTSIMVEAFGTEKIPADQLTLLVREFFDLRPYGLIKMLDLL---HPIYRETAAYGHFGRE--HFPWE 369

HSP 2 Score: 40.4318 bits (93), Expect = 3.687e-20
Identity = 21/45 (46.67%), Postives = 24/45 (53.33%), Query Frame = 2

Query:    2 DTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLCSQ 136
            DTY             KDP+KVDRS AY  R  AK+IVA GL  +
Sbjct:  250 DTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADR 294

The following BLAST results are available for this feature:

BLAST of BQ623746 vs. ExPASy Swiss-Prot

BLAST of BQ623746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_ENTFA	2.833e-20	42.35	S-adenosylmethionine synthetase OS=Enterococcus fa...	[more]
METK_OENOB	2.834e-20	47.06	S-adenosylmethionine synthetase OS=Oenococcus oeni...	[more]
METK_SODGM	2.835e-20	48.24	S-adenosylmethionine synthetase OS=Sodalis glossin...	[more]
METK_SERP5	2.835e-20	48.24	S-adenosylmethionine synthetase OS=Serratia protea...	[more]
METK_ENT38	2.835e-20	48.24	S-adenosylmethionine synthetase OS=Enterobacter sp...	[more]
METK_SULNB	2.835e-20	42.53	S-adenosylmethionine synthetase OS=Sulfurovum sp. ...	[more]
METK_PROMP	3.681e-20	43.33	S-adenosylmethionine synthetase OS=Prochlorococcus...	[more]
METK_CLONN	3.686e-20	45.88	S-adenosylmethionine synthetase OS=Clostridium nov...	[more]
METK_YERPY	3.687e-20	49.41	S-adenosylmethionine synthetase OS=Yersinia pseudo...	[more]
METK_YERPS	3.687e-20	49.41	S-adenosylmethionine synthetase OS=Yersinia pseudo...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00837 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00837 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623746 ID=BQ623746; Name=BQ623746; organism=Citrus sinensis; type=EST; length=587bp
GGACACTTATGGTGGCTGGGGAGCCCATGGTGGCGGTGCTTTCTCTGGAA
AAGACCCTACTAAGGTGGATAGGAGTGGTGCATACATTGTTAGGCAGGCT
GCTAAGAGCATTGTTGCAAACGGGCTTTGCTCGCAGGTGCATTGTCCAAG
TCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTGTTTTTGTGGACTCA
TATGGAACCGGCAAGATTCCTGACAAGGAGATCCTCAAAATTGTGAAGGA
AAGCTTTGATTTCAGGCCAGGAATGATGACCATCAATTTGGATCTCAAAA
GGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCTATGGACACTTTGGC
AGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAGCCCCTCAAGTGGGA
AAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAAACTATCCCTGCTGT
TCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTTGAATATTATCTTGC
TGCTGCTTTGTAATACTAAGCAAATCTCCTGGGTTCAAAACTCATACATG
TTCCCCATTCAATTCCCTTTCTTATTCTTCTTTCCCC