BQ623747

Overview
NameBQ623747
Unique NameBQ623747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:164..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.453e-22
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E Y
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 176          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.453e-22
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E Y
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 174          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.453e-22
Identity = 59/130 (45.38%), Postives = 76/130 (58.46%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E Y
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGY 174          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 55/130 (42.31%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++     +++L+G  E Y
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGY 173          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G    +    + A+ A +++L+G  E Y
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGY 176          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 58/130 (44.62%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G    +    + A+ A ++VL+G  E Y
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGY 173          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 58/130 (44.62%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E Y
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 175          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.921e-22
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    I    + A+ A +++L+G  E Y
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGY 154          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.692e-21
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYY 589
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+  A++VL+G  E Y
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGY 174          
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.210e-21
Identity = 57/130 (43.85%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  209 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 589
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E Y
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176          
The following BLAST results are available for this feature:
BLAST of BQ623747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2A_SPIOL4.453e-2243.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC4.453e-2243.85Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB215_PEA4.453e-2245.38Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_APIGR5.816e-2242.31Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP5.816e-2243.85Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB22_HORVU5.816e-2244.62Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PETSP5.816e-2244.62Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_SOYBN9.921e-2243.85Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_PETSP1.692e-2143.85Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_PETSP2.210e-2143.85Chlorophyll a-b binding protein 91R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00838 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00838 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623747 ID=BQ623747; Name=BQ623747; organism=Citrus sinensis; type=EST; length=590bp
AGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCA
ACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCA
AACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGC
CCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGC
TCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTC
TTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGA
CTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCA
AATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCT
GCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGG
TCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACA
CATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTC
ATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATA
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