BQ623748

Overview
NameBQ623748
Unique NameBQ623748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.293e-44
Identity = 86/169 (50.89%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVLK G  + F P+GL  EVK++E HH  +++A PGDN+GFNVK V  KD+KRG VA  S D P   A  FT+++++M HP  I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +
Sbjct:  259 GVLKVGDKLVFMPAGLVAEVKTIETHHTKIEKAEPGDNIGFNVKGVEKKDIKRGDVAG-SLDVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQV 426          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.995e-44
Identity = 84/168 (50.00%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  +  GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+
Sbjct:  253 GIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.912e-44
Identity = 84/169 (49.70%), Postives = 121/169 (71.60%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GV+K G  + F P+G + EV+S+E HH  L++A PGDN+GFNV+ +  KD+KRG V  ++ + P   A  FT++VI++ HP  +  GY PV+  HT+ IA + SE+V ++D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI
Sbjct:  257 GVMKVGDKIVFMPAGKSAEVRSIETHHTKLEKAEPGDNIGFNVRGIDKKDVKRGDVVGHTTNPPT-VAEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVI 424          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.912e-44
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G++K GM V+F P+    E+KS+EMHHE + +ALPGDNVGFNV+ +   D++RG V   S D P   A  F +QV++++HP  +  GY PV  CHT+ IA  F EL+ K+D R+G+  E+ P FLK GDA +VK+ PT+PMV+E   + P LGRFAVRDM  T+A GV
Sbjct:  249 GIMKKGMKVSFMPANKEGEIKSIEMHHEEIPQALPGDNVGFNVRGIGKGDIRRGDVCGPS-DVPPTVAEEFIAQVVVLHHPSALTVGYTPVFHCHTAQIACSFVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGV 415          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 5.109e-44
Identity = 86/168 (51.19%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            GV+K G  V F P+G + EVKS+EMHHE  + A PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  239 GVMKKGENVIFEPAGASGEVKSIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 6.673e-44
Identity = 84/168 (50.00%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  253 GIIKPGDKVVFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 84/168 (50.00%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  253 GIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.715e-44
Identity = 84/168 (50.00%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  253 GIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.138e-43
Identity = 85/167 (50.90%), Postives = 114/167 (68.26%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG 501
            GVLKPG  V F P+    +VKS+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q+I++NHP  I  GY PV   HT+ +A +  E+V  ++ + G  L+++P F+KNGD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G
Sbjct:  251 GVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHL-DTPPTVVKAFTAQIIVLNHPSVIAPGYKPVFHVHTAQVACRIDEIVKTLNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAG 416          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.138e-43
Identity = 87/169 (51.48%), Postives = 120/169 (71.01%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVLK G  V F P G   EV+S+E HH  +++A PGDN+GFNV+ V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+
Sbjct:  257 GVLKVGDKVVFMPVGKVGEVRSIETHHTKIEKAEPGDNIGFNVRGVEKKDIKRGDVAG-SLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVV 424          
The following BLAST results are available for this feature:
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
EF1A_DESMO2.293e-4450.89Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_METVS2.995e-4450.00Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METS53.912e-4449.70Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_METMJ3.912e-4450.60Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_METS35.109e-4451.19Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_METMP6.673e-4450.00Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM68.715e-4450.00Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM58.715e-4450.00Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_THEAC1.138e-4350.90Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_SULTO1.138e-4351.48Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00839 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00839 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623748 ID=BQ623748; Name=BQ623748; organism=Citrus sinensis; type=EST; length=512bp
GGTGTGCTCAAGCCTGGTATGGTGGTGACATTTGGTCCCTCTGGATTGAC
AACTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCC
TTCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGAT
CTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGA
AGCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGA
TTGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCT
GTCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGA
GCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTA
AGATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCA
CCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGG
TGTGATCAAGAG
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