BQ623748

Overview
NameBQ623748
Unique NameBQ623748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.138e-43
Identity = 83/168 (49.40%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G+++PG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  253 GIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.138e-43
Identity = 84/168 (50.00%), Postives = 114/168 (67.86%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G++K GM V+F P+    E+KS+EMHHE + +A+PGDNVGFNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+
Sbjct:  249 GIMKKGMKVSFMPANKDGEIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGM 415          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.536e-43
Identity = 83/169 (49.11%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVLK G  V F P G+  EV+S+EMHHE +++A+PGDN+GFNV+ V+  D+KRG VA + ++ P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++
Sbjct:  261 GVLKVGDKVVFMPPGVGGEVRSIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGHPENPPT-VADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIV 428          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.312e-43
Identity = 86/177 (48.59%), Postives = 120/177 (67.80%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVL+ G VV F P+       +  EVKS+EMHHE LQEA PGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++
Sbjct:  245 GVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMV 421          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.312e-43
Identity = 86/177 (48.59%), Postives = 120/177 (67.80%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVL+ G VV F P+       +  EVKS+EMHHE LQEA PGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++
Sbjct:  245 GVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMV 421          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.325e-43
Identity = 83/168 (49.40%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G++K GM V+F P+    E+KS+EMHHE   +ALPGDNVGFNV+ V   D++RG V   + D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+
Sbjct:  249 GIMKKGMKVSFMPANKDGEIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGM 415          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 5.649e-43
Identity = 84/167 (50.30%), Postives = 112/167 (67.07%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVG 501
            GVLKPG  V F P+    +VKS+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G
Sbjct:  251 GVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAG 416          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.258e-42
Identity = 87/169 (51.48%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVLK G  + F P G   EV+S+E HH  + +A PGDN+GFNV+ V  KD+KRG VA  S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI
Sbjct:  257 GVLKVGDKIVFMPVGKIGEVRSIETHHTKIDKAEPGDNIGFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVI 424          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.258e-42
Identity = 82/168 (48.81%), Postives = 113/168 (67.26%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G+LK    + F P+G+T EVKS+EMHHE L +A PGDNVGFNV+ V   D+KRG VA  +++ P+  A  F +Q++++ HPG +  GY PV   HT+ +A  F  L  K+D  +G+  E+ P FLK GDA +V + PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  239 GILKTAENIAFEPAGVTGEVKSIEMHHEVLDKAEPGDNVGFNVRGVGKNDIKRGDVAGTTQNPPS-VAKEFKAQIVVLQHPGVMTVGYTPVFHAHTAQVACTFLSLDVKLDPATGQPKEENPDFLKTGDAALVTIKPTKPMVIENIKEIPHMGRFAIRDMGQTVAAGM 405          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 84/177 (47.46%), Postives = 119/177 (67.23%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G LK G VV F P+       +  EVKS+EMHHE LQEALPGDN+GFNV+ V+  D+KRG VA ++   P   R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++
Sbjct:  245 GKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMV 421          
The following BLAST results are available for this feature:
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
EF1A_METM71.138e-4349.40Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METB61.138e-4350.00Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_IGNH42.536e-4349.11Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_THEGJ3.312e-4348.59Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_PYRKO3.312e-4348.59Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METPE4.325e-4349.40Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_THEVO5.649e-4350.30Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_SULAC1.258e-4251.48Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METST1.258e-4248.81Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_PYRHO4.782e-4247.46Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00839 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00839 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623748 ID=BQ623748; Name=BQ623748; organism=Citrus sinensis; type=EST; length=512bp
GGTGTGCTCAAGCCTGGTATGGTGGTGACATTTGGTCCCTCTGGATTGAC
AACTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCC
TTCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGAT
CTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGA
AGCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGA
TTGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCT
GTCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGA
GCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTA
AGATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCA
CCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGG
TGTGATCAAGAG
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