BQ623748

Overview
NameBQ623748
Unique NameBQ623748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.157e-42
Identity = 85/177 (48.02%), Postives = 117/177 (66.10%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G LK G VV F P+       +  EVKS+EMHHE LQEALPGDN+GFNV+ V+  D+KRG VA +    P   R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ KID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++
Sbjct:  245 GKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHPDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKIDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMV 421          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_META3 (Elongation factor 1-alpha OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=tuf PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.157e-42
Identity = 81/168 (48.21%), Postives = 114/168 (67.86%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            GV+KPG  V F P+G++ E+K++E HHE L +A PGDNVGFNV+ V  KD+K+G V  +  + P   A  FT+Q++++ HP  +  GY PV   HT+ +A  F EL  K++  +G+  E+ P FLK GDA +VK++PTKPMV+E   + P LGRFA+RDM  TVA G+
Sbjct:  253 GVMKPGDKVVFEPAGVSGEIKTIEAHHEQLPKAEPGDNVGFNVRGVGKKDIKKGDVLGHPDNIPT-VAEEFTAQIVVLQHPSVMTVGYTPVFHAHTAQVACTFMELQKKLNPATGEVKEENPDFLKAGDAAIVKIMPTKPMVIENVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.391e-41
Identity = 80/169 (47.34%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVLK G  +   P     EVKS+E HH  LQEA+PGDN+GFNVK V    L+RG VA ++ + P   A  FT ++ ++ HP  I  GY PVL  HT+ + V F EL+ K+D R+G   E++P+++K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+
Sbjct:  257 GVLKVGDKIIINPPKAVGEVKSIETHHTPLQEAIPGDNIGFNVKGVEKSQLRRGDVAGHTTNPPT-VAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVV 424          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.391e-41
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G L+ G VV F P+       +  EVKS+EMHHE L+EALPGDN+GFNV+ V+  D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ K+D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++
Sbjct:  247 GKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMV 423          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.391e-41
Identity = 82/177 (46.33%), Postives = 120/177 (67.80%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G L+ G VV F P+       +  EVKS+EMHHE L+EALPGDN+GFNV+ V+  D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ K+D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++
Sbjct:  245 GKLRVGEVVIFEPASTIFHKPIQGEVKSIEMHHEPLEEALPGDNIGFNVRGVSKNDIKRGDVAGHTTNPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMV 421          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.817e-41
Identity = 76/168 (45.24%), Postives = 112/168 (66.67%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            GVLK G  V F P+ ++ EVKS+E+HH+ + EA PGDN+G+NV+ +   D++RG V  +  D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A   +E+  K+D R+G   E+ P F+K GDA ++ + PTKPMV+E   + P LGRFA+RDM  T+A G+
Sbjct:  251 GVLKKGDKVIFEPAHVSGEVKSIEIHHQEIPEAYPGDNIGWNVRGIGKNDIRRGDVCGHV-DNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTITEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGM 417          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41
Identity = 80/169 (47.34%), Postives = 118/169 (69.82%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVL+ G  V F P     EV+S+E HH  +++A PGDN+GFNV+ V+ +D++RG VA +  D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A +  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+
Sbjct:  258 GVLRVGDKVVFMPPAKVGEVRSIETHHVRIEKAEPGDNIGFNVRGVSKRDIRRGDVAGHL-DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVV 425          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.100e-41
Identity = 97/190 (51.05%), Postives = 126/190 (66.32%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSG-LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL-------------EKEPK------FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIK 510
            G+LK GM VTF P+G    EVKSVEMHH ++ +A+PGDNVGFNVK + VKD+KRG V  ++K+DP      F + VII +H   I NGY PVLDCHT+HIA KF+ +++K D+R GK+              + EP+        K G++  V + PTK MVVE +S Y PLGRFAVRDM++TVAVGVI+
Sbjct:  286 GILKAGMQVTFEPAGKAAVEVKSVEMHHTSVPQAIPGDNVGFNVK-LTVKDIKRGDVCGDTKNDPPIPTECFLANVIIQDHKN-IRNGYTPVLDCHTAHIACKFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQ 472          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.048e-41
Identity = 80/168 (47.62%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            G +K G  V F P G   EVKS+EMHHE + +ALPGDN+G+NV+ +   D++RG V  ++ D+P + A  F  Q++++ HP  I  GY PV   HTS IA +  EL  K+D +SG+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+
Sbjct:  249 GTMKKGDKVVFMPGGAAGEVKSIEMHHEEIPQALPGDNIGWNVRGIGKADVRRGDVCGHT-DNPPKVADTFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIELNKKLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGM 415          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.287e-41
Identity = 86/178 (48.31%), Postives = 114/178 (64.04%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTT-------EVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAA---NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 504
            GVL+ G  V F P+   T       EV+S+EMHHE ++ A PGDN+GFNVK V   D+ RG VA +  D+PA        F +Q++++ HP  I  GY PV  CHT+ +A KF EL+ KID  +G+ +E+ P FLK G+A  V++ PTKPMV+E  S  P LGRFA+RDM QTVA G+
Sbjct:  239 GVLEVGDTVRFEPAYTATGGRKGEGEVRSIEMHHEEIERAEPGDNIGFNVKGVGKNDISRGDVACHP-DEPATVVTPDDTFIAQIVVLQHPSAITAGYTPVFHCHTAQVACKFEELIEKIDPATGEVIEENPDFLKTGEAAKVRIRPTKPMVIEEVSFIPQLGRFAIRDMGQTVAAGM 415          
The following BLAST results are available for this feature:
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
EF1A_PYRAB8.157e-4248.02Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_META38.157e-4248.21Elongation factor 1-alpha OS=Methanococcus aeolicu... [more]
EF1A_THEPD1.391e-4147.34Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_PYRWO1.391e-4146.33Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRFU1.391e-4146.33Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]
EF1A_METTP1.817e-4145.24Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_STAMF3.100e-4147.34Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1AS_PORPU3.100e-4151.05Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_METBF4.048e-4147.62Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_METKA5.287e-4148.31Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00839 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00839 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623748 ID=BQ623748; Name=BQ623748; organism=Citrus sinensis; type=EST; length=512bp
GGTGTGCTCAAGCCTGGTATGGTGGTGACATTTGGTCCCTCTGGATTGAC
AACTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCC
TTCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGAT
CTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGA
AGCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGA
TTGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCT
GTCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGA
GCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTA
AGATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCA
CCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGG
TGTGATCAAGAG
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