BQ623748

Overview
NameBQ623748
Unique NameBQ623748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.189e-38
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G+L  G  V+F PS ++ EVK+VEMHHE + +A PGDNVGFNV+ V   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  KID  SG+  E+ P F+++GDA +V + P KP+ +E+ ++ P LG FA+RDM QTVA G +
Sbjct:  249 GILNTGDNVSFQPSDVSGEVKTVEMHHEEVPKAEPGDNVGFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKV 416          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.146e-38
Identity = 78/174 (44.83%), Postives = 117/174 (67.24%), Query Frame = 1
Query:    1 GVLKPG----MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIK 510
            G LKPG    ++ +  P+G   EVKS+EMHH+ L+EALPGDN+GF+V+ +   D+ RG VA +  D+P   A    + + ++ HP  I  GYAPVL  HT+H+ V+F EL  K++  +G+ +E+ P+ L+ G+A +VK+ P KP+V+E F   P LGRFA+RDM +TVA+G+ +
Sbjct:  250 GKLKPGDKIIVLPSKKPNGAIGEVKSIEMHHKPLEEALPGDNIGFSVRGIEKGDVMRGDVAGHL-DNPPTVAEEIVALIHVIYHPSAITVGYAPVLHVHTAHVPVRFEELRGKVNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIAR 422          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 75/173 (43.35%), Postives = 109/173 (63.01%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPS----GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G++K G  V F P     G   EVKS+EMHHE + +ALPGDN+GFNV+ +    ++RG V  +    P   A  F +QV+++ HP  I  GY PV  CHT+ +A   ++++  +D ++G   E+ P F+K GDA +V + PT+P+V+E   + P LGRFA+RDM QTVA GV+
Sbjct:  249 GIMKKGDKVIFRPGIDGVGHAGEVKSIEMHHEEIPQALPGDNIGFNVRGIEKNLIRRGDVCGHVDKQPT-VAVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVV 420          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.219e-37
Identity = 76/169 (44.97%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GVLK G  V   P     +V+S+E HH  L++A PGDN+G NV+ ++ +D++RG V     + P   A    ++V+I+ HP  IG GYAPV+  HT+ + V+  ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FS++P LGRFA+RDM +T+A G I
Sbjct:  266 GVLKVGDRVVIVPPAKVGDVRSIETHHMKLEQAQPGDNIGVNVRGISKEDVRRGDVLGKVDNVPT-VAEEIVARVVILWHPTAIGPGYAPVMHIHTATVPVQIVELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSEFPALGRFALRDMGRTIAAGQI 433          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.715e-37
Identity = 76/169 (44.97%), Postives = 107/169 (63.31%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G + PG  V+F PS +  EVK+VEMHHE + +A PGDNVGFNV+ +   D++RG V   S + P   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E++P F+K+GDA +V + P KP+ +E  ++ P LG FAVRDM QT+A G +
Sbjct:  248 GTVSPGDDVSFQPSDVGGEVKTVEMHHEEVDQAGPGDNVGFNVRGIGKDDIRRGDVCGPSSNAPT-VAETFKAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDQKLDPASGEVAEEDPDFIKSGDAAVVTVRPQKPLSIEPSNEIPELGSFAVRDMGQTIAAGKV 415          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 76/169 (44.97%), Postives = 106/169 (62.72%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GV+  G  V+F PS +  EVK++EMHHE +  A PGDNVGFNV+ +   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G +
Sbjct:  248 GVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKV 415          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.032e-36
Identity = 76/169 (44.97%), Postives = 106/169 (62.72%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GV+  G  V+F PS +  EVK++EMHHE +  A PGDNVGFNV+ +   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G +
Sbjct:  248 GVMNTGDNVSFQPSDVGGEVKTIEMHHEEVPNAEPGDNVGFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKV 415          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.542e-35
Identity = 72/169 (42.60%), Postives = 108/169 (63.91%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            GV+K G  +   P     +V+S+E HH  L+EA  GDNVG NV+    +DLKRG V  +  + P   A    +++ ++ HP  IG GY PV+  HT+ +  +  EL++++D  +G+ +E++P+F+K GD  MV++ P KP+VVE FSD P LGRF++RDM +TVA G I
Sbjct:  265 GVVKVGDTIVALPPAKVGDVRSIETHHMKLEEAKAGDNVGINVRGFERQDLKRGDVVGHLNNPPT-VAEEIVARIAVLEHPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQI 432          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.688e-19
Identity = 55/172 (31.98%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEA---LPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G +K G  +   P+    EV ++  ++E  QEA     G+ V   +K V  +DL+ G+V ++ K+ P +    F +Q+ I+     + NG++ V+  HT+   VKF EL  K+++ + ++ +K P F K G   +  +  ++P+  ET+ DYP LGRF +RD   T+A+G I
Sbjct:  540 GHVKKGTNLILMPNKTPVEVLTI--YNETEQEADTAFSGEQVRLKIKGVEEEDLQPGYVLTSPKN-PVKTVTKFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKI 708          
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 50/170 (29.41%), Postives = 94/170 (55.29%), Query Frame = 1
Query:    1 GVLKPGMVVTFGPSGLTTEVKSVEMHHE-ALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 507
            G ++ G      P+ +  E++++    E  +  A+ G+ V   +K V  +D+  GFV ++ K+ P +    F +QV I+     + +G++ V+  HT+   V+ ++L+ K++R + ++ +K P F K G   +  +   +P+ VET+ DYP LGRF +RD   T+A+G I
Sbjct:  489 GHIRKGHSTLLMPNKIPVEIQNIYNETENEVDMAICGEQVKLKIKGVEEEDIAPGFVLTSPKN-PVKNVTRFVAQVAIVELKSILSSGFSCVMHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTIAIGKI 657          
The following BLAST results are available for this feature:
BLAST of BQ623748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
EF1A_NATPD4.189e-3846.15Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_NANEQ7.146e-3844.83Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_UNCMA9.333e-3843.35Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_PYRIL1.219e-3744.97Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_HALWD2.715e-3744.97Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_HALSA1.032e-3644.97Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS31.032e-3644.97Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_CALMQ2.542e-3542.60Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
ERF3_CANMA5.688e-1931.98Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO1.267e-1829.41Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00839 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00839 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623748 ID=BQ623748; Name=BQ623748; organism=Citrus sinensis; type=EST; length=512bp
GGTGTGCTCAAGCCTGGTATGGTGGTGACATTTGGTCCCTCTGGATTGAC
AACTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCC
TTCCGGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGAT
CTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGA
AGCTGCCAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGA
TTGGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCT
GTCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGA
GCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTA
AGATGATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCA
CCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGG
TGTGATCAAGAG
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