BQ623749

Overview
NameBQ623749
Unique NameBQ623749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623749_ssr52 microsatellite BQ623749_ssr52:52..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCN1_CAEEL (Defective in cullin neddylation protein 1 OS=Caenorhabditis elegans GN=dcn-1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 37/108 (34.26%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  242 EMERIDNLFYSYANKSSGM----IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKR-PTNFQDFYAFAFRY 550
            +   I+ LF  Y +    +    + P GI  L +D+    TD R+L+LAWK  A+ Q  F+L+EW +G+ AL+ADTV  L++ +  +   ++     F + Y FAF Y
Sbjct:   61 DRSNIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNY 168          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCN1L_DROME (DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  242 EMERIDNLFYSYANKSSGM-IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKQRV*T*RVSANYWGLV 616
            + +RI+ LF  Y + S  + I  +G+     D+++      +L++AWK  AE Q  F+ +E+  G+  L  D+++KLK  LP LE+E+     F+DFY F F Y   +  Q+     ++  YW +V
Sbjct:   57 DRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLIIAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKFKDFYHFTFNYA-KDPGQKGIDLEMAIAYWCIV 181          
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Match: DCN1M_DICDI (DCN1-like protein 2 OS=Dictyostelium discoideum GN=DDB_G0272016 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  299 IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKR-PTNFQDFYAFAFRYCLTEEKQR 574
            I PEGI   CSDI ++     IL+LAW M A K GYF+  E+  G + L+   ++ LKK L    +++K   T F D Y +AF +    E ++
Sbjct:   94 IGPEGIARFCSDIGLAPDSFEILVLAWTMNASKMGYFSKNEFSSGFEKLQCSDLSTLKKQLNSTSQKLKHDSTKFTDLYKYAFGFASEVESKK 186          
The following BLAST results are available for this feature:
BLAST of BQ623749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DCN1_CAEEL4.552e-1234.26Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCN1L_DROME2.259e-1131.75DCN1-like protein OS=Drosophila melanogaster GN=CG... [more]
DCN1M_DICDI5.033e-1137.63DCN1-like protein 2 OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00840 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00840 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623749 ID=BQ623749; Name=BQ623749; organism=Citrus sinensis; type=EST; length=617bp
GGAGCAAGCAAAAAATCAAAAAAGCAAAAGCAACAGAGAGCGTGATCATC
ATCGTCGTCGTCGAATCATATTATAAGCTTTTAAATTAAAAGAGCGACGA
AGCTTCTTCGTTCGCTTCTCCCATCCGACGTTCGTATTTTTTCAAATTAT
GCGTCGTTCTGTATCGAGAAAAACGGGTCAAACTAATTCAACCGACGCCA
CGGATCTCTTTCGCTCCGCCTCAAGTAAAGCATCTTCGAAAGAGATGGAA
CGAATCGATAACCTGTTTTATTCGTATGCGAATAAGTCTTCTGGCATGAT
TGACCCAGAAGGAATTGAAAGTCTGTGTTCAGATATCGAAGTCAGTCATA
CTGATGTTCGGATCTTGATGCTTGCTTGGAAAATGAAAGCGGAAAAGCAA
GGGTATTTTACTCTGGAGGAATGGCGGAGAGGCCTAAAAGCATTGAGGGC
TGACACTGTAAATAAATTAAAGAAGGCCCTTCCTGATCTGGAGAAAGAGG
TGAAGAGGCCAACAAACTTTCAAGATTTCTATGCTTTTGCATTCCGGTAT
TGCTTAACAGAGGAGAAACAAAGAGTGTAGACATAGAGAGTGTCTGCGAA
TTACTGGGGTCTTGTTT
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