BQ623756

Overview
NameBQ623756
Unique NameBQ623756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9356 contig Csv1_Contig9356:199..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 2
Query:   74 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.157e-23
Identity = 56/120 (46.67%), Postives = 81/120 (67.50%), Query Frame = 2
Query:   68 QSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPG-----KALFVFV-KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            +SFK E++ E+R   S +I  +Y DR+P+I ER + +D+PD+ KKKFL P +M +  F  I+  R HL        KA+F+FV K+ LP ++ L+ S+Y++ KDEDGFLY+CYS E TFG
Sbjct:    6 KSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNF--IMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.123e-20
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   56 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 98.5969 bits (244), Expect = 2.501e-20
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   56 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   56 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 7.277e-20
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   56 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            M   ++FK   +FEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.241e-19
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   56 MGKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            M   ++FK   TFEQR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM  +S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 46/117 (39.32%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   65 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 409
            ++ FK   +   R EE   I AK+P+++PV+ ERY +   LP ++K KFLVP+++++ QF+ I+ SR+ L   +A ++ V + +L   +  M  +Y  +KDEDGF+YM Y+S++TFG
Sbjct:   10 VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   74 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 412
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   74 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 412
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
The following BLAST results are available for this feature:
BLAST of BQ623756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GBRAP_BOVIN7.513e-2546.43Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8L_DICDI3.157e-2346.67Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3B_HUMAN1.123e-2044.17Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN2.501e-2044.17Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT7.277e-2042.50Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE7.277e-2042.50Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN1.241e-1943.33Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3C_HUMAN1.051e-1839.32Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.051e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT1.372e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00847 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00847 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623756 ID=BQ623756; Name=BQ623756; organism=Citrus sinensis; type=EST; length=596bp
GGGGTAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAATTGAGACGATA
CGGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACATTCGAGCAA
AGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGATCGAGTCCC
CGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATATGGAAAAGA
AAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTTATTCACATT
TTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTTTGTATTTGT
GAAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAGTCTATGAAT
CCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGCAGTGAGAAA
ACCTTTGGTTATGAAAGAATTCAGACTTGTTAATACTTGAACTTTGTTCA
TGGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGTGAAATGATG
TATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCTTAGTCTTAT
TCTGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGATATAA
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