BQ623764 | Citrus Genome Database

Overview


Name	BQ623764
Unique Name	BQ623764
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	474

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3974	contig	Csv1_Contig3974:305..779.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_MAIZE (Cytochrome b6-f complex subunit 5 OS=Zea mays GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_LOTJA (Cytochrome b6-f complex subunit 5 OS=Lotus japonicus GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_LOLPR (Cytochrome b6-f complex subunit 5 OS=Lolium perenne GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_LIRTU (Cytochrome b6-f complex subunit 5 OS=Liriodendron tulipifera GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_LACSA (Cytochrome b6-f complex subunit 5 OS=Lactuca sativa GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_JASNU (Cytochrome b6-f complex subunit 5 OS=Jasminum nudiflorum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_IPOPU (Cytochrome b6-f complex subunit 5 OS=Ipomoea purpurea GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_ILLOL (Cytochrome b6-f complex subunit 5 OS=Illicium oligandrum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_HORVU (Cytochrome b6-f complex subunit 5 OS=Hordeum vulgare GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_HELAN (Cytochrome b6-f complex subunit 5 OS=Helianthus annuus GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

The following BLAST results are available for this feature:

BLAST of BQ623764 vs. ExPASy Swiss-Prot

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
PETG_MAIZE	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Zea mays GN=p...	[more]
PETG_LOTJA	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Lotus japonic...	[more]
PETG_LOLPR	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Lolium perenn...	[more]
PETG_LIRTU	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Liriodendron ...	[more]
PETG_LACSA	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Lactuca sativ...	[more]
PETG_JASNU	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Jasminum nudi...	[more]
PETG_IPOPU	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Ipomoea purpu...	[more]
PETG_ILLOL	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Illicium olig...	[more]
PETG_HORVU	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Hordeum vulga...	[more]
PETG_HELAN	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Helianthus an...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00855 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00855 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623764 ID=BQ623764; Name=BQ623764; organism=Citrus sinensis; type=EST; length=474bp
AAGAACATATTTCCTTTAGCTCTGTCATGCTTACTATAACTAGTTATTTT
GGTTTTCTACTAGCGGCTTTAACTATAACCTCGGCTCTATTTATTGGTCT
GAGTAAGATAGGACTTATTTGAAATTAATTGAAGGAATAATTCATAAAAA
GAAACCCTTCTGTGGTATTCCACATATTGTCTAGTTCCTTACCGTACCAC
GTTAATTACCAATTATTGGTTATTGAGATTCCTAGGCAAGGCAGATTAAT
ATTTAGGAATAGATATTACCTCTCTTTTTAACCTTTCAAATAAAAAAAAA
ATAAATAAAATTCAAATGATTGAAGTCTTTCTATTTGGAATCGTCTTAGG
TCTAATTCCTATTACTTTGGCTGGATTATTCGTAACCGCCTATTTACAAT
ACAGACGTGGTGATCAGTTGGACCTTTGATTAATTAACATCTCTTTTTTT
AACTGACCCCTCCCTTCTTTAATT