BQ623764 | Citrus Genome Database

Overview


Name	BQ623764
Unique Name	BQ623764
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	474

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3974	contig	Csv1_Contig3974:305..779.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CHLSC (Cytochrome b6-f complex subunit 5 OS=Chloranthus spicatus GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CERDE (Cytochrome b6-f complex subunit 5 OS=Ceratophyllum demersum GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CARPA (Cytochrome b6-f complex subunit 5 OS=Carica papaya GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CALFG (Cytochrome b6-f complex subunit 5 OS=Calycanthus floridus var. glaucus GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_BUXMI (Cytochrome b6-f complex subunit 5 OS=Buxus microphylla GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_BRADI (Cytochrome b6-f complex subunit 5 OS=Brachypodium distachyon GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_BETWE (Cytochrome b6-f complex subunit 5 OS=Beta webbiana GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_BETVU (Cytochrome b6-f complex subunit 5 OS=Beta vulgaris GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_BETTR (Cytochrome b6-f complex subunit 5 OS=Beta trigyna GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

[Close]

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_ATRBE (Cytochrome b6-f complex subunit 5 OS=Atropa belladonna GN=petG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1

Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37

The following BLAST results are available for this feature:

BLAST of BQ623764 vs. ExPASy Swiss-Prot

BLAST of BQ623764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
PETG_CHLSC	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Chloranthus s...	[more]
PETG_CERDE	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Ceratophyllum...	[more]
PETG_CARPA	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Carica papaya...	[more]
PETG_CALFG	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Calycanthus f...	[more]
PETG_BUXMI	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Buxus microph...	[more]
PETG_BRADI	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Brachypodium ...	[more]
PETG_BETWE	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Beta webbiana...	[more]
PETG_BETVU	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Beta vulgaris...	[more]
PETG_BETTR	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Beta trigyna ...	[more]
PETG_ATRBE	1.765e-13	100.00	Cytochrome b6-f complex subunit 5 OS=Atropa bellad...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00855 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00855 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623764 ID=BQ623764; Name=BQ623764; organism=Citrus sinensis; type=EST; length=474bp
AAGAACATATTTCCTTTAGCTCTGTCATGCTTACTATAACTAGTTATTTT
GGTTTTCTACTAGCGGCTTTAACTATAACCTCGGCTCTATTTATTGGTCT
GAGTAAGATAGGACTTATTTGAAATTAATTGAAGGAATAATTCATAAAAA
GAAACCCTTCTGTGGTATTCCACATATTGTCTAGTTCCTTACCGTACCAC
GTTAATTACCAATTATTGGTTATTGAGATTCCTAGGCAAGGCAGATTAAT
ATTTAGGAATAGATATTACCTCTCTTTTTAACCTTTCAAATAAAAAAAAA
ATAAATAAAATTCAAATGATTGAAGTCTTTCTATTTGGAATCGTCTTAGG
TCTAATTCCTATTACTTTGGCTGGATTATTCGTAACCGCCTATTTACAAT
ACAGACGTGGTGATCAGTTGGACCTTTGATTAATTAACATCTCTTTTTTT
AACTGACCCCTCCCTTCTTTAATT