BQ623764

Overview
NameBQ623764
Unique NameBQ623764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3974 contig Csv1_Contig3974:305..779. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CAPBU (Cytochrome b6-f complex subunit 5 OS=Capsella bursa-pastoris GN=petG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_BARVE (Cytochrome b6-f complex subunit 5 OS=Barbarea verna GN=petG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_ARATH (Cytochrome b6-f complex subunit 5 OS=Arabidopsis thaliana GN=petG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_AETGR (Cytochrome b6-f complex subunit 5 OS=Aethionema grandiflora GN=petG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_AETCO (Cytochrome b6-f complex subunit 5 OS=Aethionema cordifolium GN=petG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_NANDO (Cytochrome b6-f complex subunit 5 OS=Nandina domestica GN=petG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEV LFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVLLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_LEMMI (Cytochrome b6-f complex subunit 5 OS=Lemna minor GN=petG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEV LFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVLLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_FAGEA (Cytochrome b6-f complex subunit 5 OS=Fagopyrum esculentum subsp. ancestrale GN=petG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.759e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEV LFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVLLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_DAUCA (Cytochrome b6-f complex subunit 5 OS=Daucus carota GN=petG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIP+TLAGLFVTAYLQYRRGDQ DL
Sbjct:    1 MIEVFLFGIVLGLIPVTLAGLFVTAYLQYRRGDQSDL 37
[Close]
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_AMBTC (Cytochrome b6-f complex subunit 5 OS=Amborella trichopoda GN=petG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.144e-12
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVF FGIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MIEVFPFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37
The following BLAST results are available for this feature:
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
PETG_CAPBU5.135e-13100.00Cytochrome b6-f complex subunit 5 OS=Capsella burs... [more]
PETG_BARVE5.135e-13100.00Cytochrome b6-f complex subunit 5 OS=Barbarea vern... [more]
PETG_ARATH5.135e-13100.00Cytochrome b6-f complex subunit 5 OS=Arabidopsis t... [more]
PETG_AETGR5.135e-13100.00Cytochrome b6-f complex subunit 5 OS=Aethionema gr... [more]
PETG_AETCO5.135e-13100.00Cytochrome b6-f complex subunit 5 OS=Aethionema co... [more]
PETG_NANDO8.759e-1397.30Cytochrome b6-f complex subunit 5 OS=Nandina domes... [more]
PETG_LEMMI8.759e-1397.30Cytochrome b6-f complex subunit 5 OS=Lemna minor G... [more]
PETG_FAGEA8.759e-1397.30Cytochrome b6-f complex subunit 5 OS=Fagopyrum esc... [more]
PETG_DAUCA1.144e-1294.59Cytochrome b6-f complex subunit 5 OS=Daucus carota... [more]
PETG_AMBTC1.144e-1297.30Cytochrome b6-f complex subunit 5 OS=Amborella tri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00855 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00855 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623764 ID=BQ623764; Name=BQ623764; organism=Citrus sinensis; type=EST; length=474bp
AAGAACATATTTCCTTTAGCTCTGTCATGCTTACTATAACTAGTTATTTT
GGTTTTCTACTAGCGGCTTTAACTATAACCTCGGCTCTATTTATTGGTCT
GAGTAAGATAGGACTTATTTGAAATTAATTGAAGGAATAATTCATAAAAA
GAAACCCTTCTGTGGTATTCCACATATTGTCTAGTTCCTTACCGTACCAC
GTTAATTACCAATTATTGGTTATTGAGATTCCTAGGCAAGGCAGATTAAT
ATTTAGGAATAGATATTACCTCTCTTTTTAACCTTTCAAATAAAAAAAAA
ATAAATAAAATTCAAATGATTGAAGTCTTTCTATTTGGAATCGTCTTAGG
TCTAATTCCTATTACTTTGGCTGGATTATTCGTAACCGCCTATTTACAAT
ACAGACGTGGTGATCAGTTGGACCTTTGATTAATTAACATCTCTTTTTTT
AACTGACCCCTCCCTTCTTTAATT
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