BQ623764

Overview
NameBQ623764
Unique NameBQ623764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3974 contig Csv1_Contig3974:305..779. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CUSEX (Cytochrome b6-f complex subunit 5 OS=Cuscuta exaltata GN=petG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLG+IPITLAGLFVTAYLQYRRGD+LD+
Sbjct:    1 MIEVFLFGIVLGIIPITLAGLFVTAYLQYRRGDRLDV 37          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_LOBMA (Cytochrome b6-f complex subunit 5 OS=Lobularia maritima GN=petG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEV LFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVSLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_DRANE (Cytochrome b6-f complex subunit 5 OS=Draba nemorosa GN=petG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEV LFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVSLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_ARAHI (Cytochrome b6-f complex subunit 5 OS=Arabis hirsuta GN=petG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 423
            MIEV LFGIVLGLIPITLAGLFVTAYLQYRRGDQLD
Sbjct:    1 MIEVSLFGIVLGLIPITLAGLFVTAYLQYRRGDQLD 36          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_PELHO (Cytochrome b6-f complex subunit 5 OS=Pelargonium hortorum GN=petG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQY+RGD+L L
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYKRGDRLGL 37          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CUSRE (Cytochrome b6-f complex subunit 5 OS=Cuscuta reflexa GN=petG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.415e-12
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRG +LD+
Sbjct:    1 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGGRLDV 37          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_CRYJA (Cytochrome b6-f complex subunit 5 OS=Cryptomeria japonica GN=petG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            MIEV L GIVLGLIPITLAGLFVTAYLQYRRGDQLD+
Sbjct:    1 MIEVLLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDI 37          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_PHYPA (Cytochrome b6-f complex subunit 5 OS=Physcomitrella patens GN=petG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            M+E  L GIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_ANTFO (Cytochrome b6-f complex subunit 5 OS=Anthoceros formosae GN=petG PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            M+E  L GIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37          
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Match: PETG_ANGEV (Cytochrome b6-f complex subunit 5 OS=Angiopteris evecta GN=petG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1
Query:  316 MIEVFLFGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 426
            M+E  L GIVLGLIPITLAGLFVTAYLQYRRGDQLDL
Sbjct:    1 MVEALLSGIVLGLIPITLAGLFVTAYLQYRRGDQLDL 37          
The following BLAST results are available for this feature:
BLAST of BQ623764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
PETG_CUSEX1.951e-1291.89Cytochrome b6-f complex subunit 5 OS=Cuscuta exalt... [more]
PETG_LOBMA4.347e-1297.22Cytochrome b6-f complex subunit 5 OS=Lobularia mar... [more]
PETG_DRANE4.347e-1297.22Cytochrome b6-f complex subunit 5 OS=Draba nemoros... [more]
PETG_ARAHI4.347e-1297.22Cytochrome b6-f complex subunit 5 OS=Arabis hirsut... [more]
PETG_PELHO7.415e-1291.89Cytochrome b6-f complex subunit 5 OS=Pelargonium h... [more]
PETG_CUSRE7.415e-1291.89Cytochrome b6-f complex subunit 5 OS=Cuscuta refle... [more]
PETG_CRYJA1.265e-1191.89Cytochrome b6-f complex subunit 5 OS=Cryptomeria j... [more]
PETG_PHYPA2.818e-1189.19Cytochrome b6-f complex subunit 5 OS=Physcomitrell... [more]
PETG_ANTFO2.818e-1189.19Cytochrome b6-f complex subunit 5 OS=Anthoceros fo... [more]
PETG_ANGEV2.818e-1189.19Cytochrome b6-f complex subunit 5 OS=Angiopteris e... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00855 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00855 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623764 ID=BQ623764; Name=BQ623764; organism=Citrus sinensis; type=EST; length=474bp
AAGAACATATTTCCTTTAGCTCTGTCATGCTTACTATAACTAGTTATTTT
GGTTTTCTACTAGCGGCTTTAACTATAACCTCGGCTCTATTTATTGGTCT
GAGTAAGATAGGACTTATTTGAAATTAATTGAAGGAATAATTCATAAAAA
GAAACCCTTCTGTGGTATTCCACATATTGTCTAGTTCCTTACCGTACCAC
GTTAATTACCAATTATTGGTTATTGAGATTCCTAGGCAAGGCAGATTAAT
ATTTAGGAATAGATATTACCTCTCTTTTTAACCTTTCAAATAAAAAAAAA
ATAAATAAAATTCAAATGATTGAAGTCTTTCTATTTGGAATCGTCTTAGG
TCTAATTCCTATTACTTTGGCTGGATTATTCGTAACCGCCTATTTACAAT
ACAGACGTGGTGATCAGTTGGACCTTTGATTAATTAACATCTCTTTTTTT
AACTGACCCCTCCCTTCTTTAATT
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