BQ623771 | Citrus Genome Database

Overview


Name	BQ623771
Unique Name	BQ623771
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	405

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_RICRS (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Sheila Smith) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.036e-16
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 312
            +NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +
Sbjct:  314 DNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383

HSP 2 Score: 42.3578 bits (98), Expect = 5.036e-16
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYK+Y +QV+SN    A +L E GY++++GGT
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGT 313

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_RICRO (Serine hydroxymethyltransferase OS=Rickettsia rickettsii (strain Iowa) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.036e-16
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 312
            +NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +
Sbjct:  314 DNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383

HSP 2 Score: 42.3578 bits (98), Expect = 5.036e-16
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYK+Y +QV+SN    A +L E GY++++GGT
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGT 313

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_RICPU (Serine hydroxymethyltransferase OS=Rickettsia peacockii (strain Rustic) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.036e-16
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 312
            +NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +
Sbjct:  314 DNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383

HSP 2 Score: 42.3578 bits (98), Expect = 5.036e-16
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYK+Y +QV+SN    A +L E GY++++GGT
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGT 313

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_RICCN (Serine hydroxymethyltransferase OS=Rickettsia conorii GN=glyA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.036e-16
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 312
            +NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +
Sbjct:  314 DNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383

HSP 2 Score: 42.3578 bits (98), Expect = 5.036e-16
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYK+Y +QV+SN    A +L E GY++++GGT
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGT 313

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_RICAE (Serine hydroxymethyltransferase OS=Rickettsia africae (strain ESF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.036e-16
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 312
            +NH+VLV+L+   I G      L+   I  NKN +P D  S  +  GIR+GTPA T+RGF E+DF  V +
Sbjct:  314 DNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH 383

HSP 2 Score: 42.3578 bits (98), Expect = 5.036e-16
Identity = 17/33 (51.52%), Postives = 25/33 (75.76%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYK+Y +QV+SN    A +L E GY++++GGT
Sbjct:  281 PEYKSYIQQVISNAKALASSLQERGYDILTGGT 313

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_DICNV (Serine hydroxymethyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=glyA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.037e-16
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+LV+L NK + G      L   HI  NKN+VP D  S  V  GIR+GTPA+T+RGF   +  KVA
Sbjct:  314 QNHLMLVSLINKGLTGKAANDALSRAHITVNKNSVPNDPQSPFVTSGIRIGTPAITTRGFGVNEVKKVA 382

HSP 2 Score: 38.891 bits (89), Expect = 5.037e-16
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P ++ YQEQV+ N    A+  +  GY++VSGGT
Sbjct:  281 PSFQKYQEQVVENAKTMAKVFIARGYDIVSGGT 313

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_XANOR (Serine hydroxymethyltransferase OS=Xanthomonas oryzae pv. oryzae GN=glyA PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.037e-16
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            ENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E D   +A
Sbjct:  315 ENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNAVPNDPRSPFVTSGLRLGTPAITTRGYKEPDSIDLA 383

HSP 2 Score: 41.9726 bits (97), Expect = 5.037e-16
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV+ N    A TL+  GY++VSGGT
Sbjct:  282 PAFKTYQQQVVKNAQAMANTLIARGYKIVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_XANOP (Serine hydroxymethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.037e-16
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            ENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E D   +A
Sbjct:  315 ENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNAVPNDPRSPFVTSGLRLGTPAITTRGYKEPDSIDLA 383

HSP 2 Score: 41.9726 bits (97), Expect = 5.037e-16
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV+ N    A TL+  GY++VSGGT
Sbjct:  282 PAFKTYQQQVVKNAQAMANTLIARGYKIVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_XANOM (Serine hydroxymethyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.037e-16
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            ENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E D   +A
Sbjct:  315 ENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNAVPNDPRSPFVTSGLRLGTPAITTRGYKEPDSIDLA 383

HSP 2 Score: 41.9726 bits (97), Expect = 5.037e-16
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV+ N    A TL+  GY++VSGGT
Sbjct:  282 PAFKTYQQQVVKNAQAMANTLIARGYKIVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_POLSJ (Serine hydroxymethyltransferase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=glyA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 5.038e-16
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 294
            E+HL+LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  312 ESHLMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFKDEE 375

HSP 2 Score: 38.891 bits (89), Expect = 5.038e-16
Identity = 17/34 (50.00%), Postives = 24/34 (70.59%), Query Frame = 3

Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +PE+K YQ+QVL+N    A+TL + G  +VSG T
Sbjct:  278 SPEFKTYQQQVLTNARIVAETLTQRGLRIVSGRT 311

The following BLAST results are available for this feature:

BLAST of BQ623771 vs. ExPASy Swiss-Prot

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GLYA_RICRS	5.036e-16	44.29	Serine hydroxymethyltransferase OS=Rickettsia rick...	[more]
GLYA_RICRO	5.036e-16	44.29	Serine hydroxymethyltransferase OS=Rickettsia rick...	[more]
GLYA_RICPU	5.036e-16	44.29	Serine hydroxymethyltransferase OS=Rickettsia peac...	[more]
GLYA_RICCN	5.036e-16	44.29	Serine hydroxymethyltransferase OS=Rickettsia cono...	[more]
GLYA_RICAE	5.036e-16	44.29	Serine hydroxymethyltransferase OS=Rickettsia afri...	[more]
GLYA_DICNV	5.037e-16	49.28	Serine hydroxymethyltransferase OS=Dichelobacter n...	[more]
GLYA_XANOR	5.037e-16	44.93	Serine hydroxymethyltransferase OS=Xanthomonas ory...	[more]
GLYA_XANOP	5.037e-16	44.93	Serine hydroxymethyltransferase OS=Xanthomonas ory...	[more]
GLYA_XANOM	5.037e-16	44.93	Serine hydroxymethyltransferase OS=Xanthomonas ory...	[more]
GLYA_POLSJ	5.038e-16	48.44	Serine hydroxymethyltransferase OS=Polaromonas sp....	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT