BQ623771

Overview
NameBQ623771
Unique NameBQ623771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_DESDA (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=glyA PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.038e-16
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 333
            +NHL+LV+L ++ I G   E  L+   I  NKNTVP +  S  V  GIR+GT ALT+RG  +E    V  F  AA++
Sbjct:  309 DNHLMLVDLTSRDITGKDAEIALDTAGITVNKNTVPFETRSPFVTSGIRLGTAALTTRGMKQEHMRTVGQFIIAALE 385          

HSP 2 Score: 43.1282 bits (100), Expect = 5.038e-16
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QVL N +  A  L E GY+LVSGGT
Sbjct:  276 PAFKVYQQQVLDNAATLAACLTEAGYDLVSGGT 308          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_METFK (Serine hydroxymethyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glyA PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 5.038e-16
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            ++H+ LV+L+ K + G   +  L   HI  NKN +P D  S  V  GIR+G+PA+T+RGF E + A+VA
Sbjct:  312 QSHVFLVDLRPKGLTGKAADAYLGQAHITVNKNAIPNDPESPFVTSGIRIGSPAITTRGFKEAEAAEVA 380          

HSP 2 Score: 43.8986 bits (102), Expect = 5.038e-16
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+KAYQEQVL N    A+TL   G  ++SGGT
Sbjct:  279 PEFKAYQEQVLKNADTMAKTLASRGLRIISGGT 311          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.038e-16
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NH++L+NL N  I G   E ++E   I  NKNT+P D +   V  GIR+GTP +TSRG  E +   +A
Sbjct:  311 DNHMMLLNLSNLDITGKEAEGLVEQAGITVNKNTIPFDKNGPAVTSGIRVGTPTITSRGMKEPEMELIA 379          

HSP 2 Score: 44.2838 bits (103), Expect = 5.038e-16
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            TPE+KAYQ+QV+ N +  A+ L++ G +LVSGGT
Sbjct:  277 TPEFKAYQQQVVKNAACLAKRLMDNGVDLVSGGT 310          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_THEEB (Serine hydroxymethyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.504e-16
Identity = 32/69 (46.38%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+L++L++  + G   ++++  +HI  NKNT+P D  S  V  G+R+GTPALT+RGF E +FA+VA
Sbjct:  313 DNHLMLIDLRSVNLTGKEADRLMGEIHITTNKNTIPFDPASPFVTSGLRLGTPALTTRGFTEVEFAEVA 381          

HSP 2 Score: 30.8018 bits (68), Expect = 8.504e-16
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+KAY  QV+ N    A  L      LVSGGT
Sbjct:  280 PEFKAYCGQVIRNAQALAAGLQARQLRLVSGGT 312          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_PHYMT (Serine hydroxymethyltransferase OS=Phytoplasma mali (strain AT) GN=glyA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.507e-16
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  106 ENHLVLVNLKNKR--IDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 330
            ENHL LV++K+K     G ++  +L  V+I  NKN +P D    ++  GIR+GTPA+T+RGF E +FAKV+ F D A+
Sbjct:  315 ENHLFLVDVKSKNPNFTGKKISDILNKVNIVVNKNVIPFDKETPLITSGIRLGTPAMTTRGFKENEFAKVSDFIDEAI 392          

HSP 2 Score: 30.4166 bits (67), Expect = 8.507e-16
Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 3
Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++  YQ+Q+L N   FA+ L + GY ++S  T
Sbjct:  283 DFIKYQKQILKNACFFAENLQKKGYRIISKST 314          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.510e-16
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   82 MNLFLVEPENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA 390
            +NL     +NHL+L++L+N  I G  +E  L+ V+I  NKN +P D +   V  G+R+GTPA+T+RG   ED  ++A        +A  IK E    K K+ VA
Sbjct:  303 INLVSGGTDNHLMLLDLRNTGITGKELETRLDEVNITCNKNAIPFDPLGPNVTSGVRLGTPAVTTRGMKPEDMVEIADI------IANMIKDENYKEKAKERVA 400          

HSP 2 Score: 36.5798 bits (83), Expect = 8.510e-16
Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 3
Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            E+K YQ++++ N    A  L+E G  LVSGGT
Sbjct:  279 EFKEYQKRIVENAKALANALMERGINLVSGGT 310          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_VARPS (Serine hydroxymethyltransferase OS=Variovorax paradoxus (strain S110) GN=glyA PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.510e-16
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 294
            E+H++LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  312 ESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFRDEE 375          

HSP 2 Score: 39.6614 bits (91), Expect = 8.510e-16
Identity = 18/34 (52.94%), Postives = 23/34 (67.65%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +PE+KAYQ+QV+ N    A TL E G  +VSG T
Sbjct:  278 SPEFKAYQQQVVKNAQIVADTLTERGLRIVSGRT 311          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ROSCS (Serine hydroxymethyltransferase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.105e-15
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPG-DVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 330
            +NHL+L++L+NK + G   ++ L+   I  NKN VP  D S ++  GIR+GTPALT+RG  E +  ++A   D  +
Sbjct:  329 DNHLMLIDLRNKGVSGKAAQEALDRAAITTNKNAVPNDDKSPLITSGIRLGTPALTTRGMKEPEMEQIAALIDDVI 404          

HSP 2 Score: 35.039 bits (79), Expect = 1.105e-15
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE++ Y  Q++ N    A  L+  GY ++SGGT
Sbjct:  296 PEFETYARQIIRNAQTLAGALMARGYHILSGGT 328          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_GLUOX (Serine hydroxymethyltransferase OS=Gluconobacter oxydans GN=glyA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.105e-15
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVK 345
            ++HL+LV+L+ K++ G   E +LE   I ANKN +P D     V  GIR+G+PA T+RGF E +F +V    D  +  A++
Sbjct:  324 DSHLILVDLRPKKVTGKLAEAILERAGITANKNAIPFDPEKPFVTSGIRLGSPAATARGFGEAEFREVGRMIDEVLTAALE 404          

HSP 2 Score: 36.5798 bits (83), Expect = 1.105e-15
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 3
Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            E+KAYQ++VL+N    A  L   G+++V+GGT
Sbjct:  292 EFKAYQKRVLANARALADELQNRGFDIVTGGT 323          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.106e-15
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 315
            +NHL+LV+L  + + G   +  L A +I  NKN+VP D  S  +  GIR+GTPA+T RGF E +  ++ ++
Sbjct:  315 DNHLMLVDLIGRDLTGKEADAALGAANITVNKNSVPNDPRSPFITSGIRIGTPAITRRGFKEAEARELTHW 385          

HSP 2 Score: 43.5134 bits (101), Expect = 1.106e-15
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV++N     +  LE GY++VSGGT
Sbjct:  282 PEFKVYQQQVVTNAKAMVEVFLERGYKIVSGGT 314          
The following BLAST results are available for this feature:
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESDA5.038e-1644.16Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]
GLYA_METFK5.038e-1643.48Serine hydroxymethyltransferase OS=Methylobacillus... [more]
GLYA_DESAA5.038e-1643.48Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_THEEB8.504e-1646.38Serine hydroxymethyltransferase OS=Thermosynechoco... [more]
GLYA_PHYMT8.507e-1646.15Serine hydroxymethyltransferase OS=Phytoplasma mal... [more]
GLYA_THETN8.510e-1638.46Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_VARPS8.510e-1646.88Serine hydroxymethyltransferase OS=Variovorax para... [more]
GLYA_ROSCS1.105e-1540.79Serine hydroxymethyltransferase OS=Roseiflexus cas... [more]
GLYA_GLUOX1.105e-1540.74Serine hydroxymethyltransferase OS=Gluconobacter o... [more]
GLYA_SHEAM1.106e-1540.85Serine hydroxymethyltransferase OS=Shewanella amaz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT
back to top