BQ623771 | Citrus Genome Database

Overview


Name	BQ623771
Unique Name	BQ623771
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	405

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECOLC (Serine hydroxymethyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECOL6 (Serine hydroxymethyltransferase OS=Escherichia coli O6 GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECOL5 (Serine hydroxymethyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECOK1 (Serine hydroxymethyltransferase OS=Escherichia coli O1:K1 / APEC GN=glyA PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECOHS (Serine hydroxymethyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECODH (Serine hydroxymethyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECOBW (Serine hydroxymethyltransferase OS=Escherichia coli (strain K12 / BW2952) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECO8A (Serine hydroxymethyltransferase OS=Escherichia coli O8 (strain IAI1) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECO81 (Serine hydroxymethyltransferase OS=Escherichia coli O81 (strain ED1a) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECO7I (Serine hydroxymethyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

The following BLAST results are available for this feature:

BLAST of BQ623771 vs. ExPASy Swiss-Prot

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GLYA_ECOLC	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECOL6	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECOL5	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECOK1	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECOHS	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECODH	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECOBW	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECO8A	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECO81	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECO7I	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT