BQ623771 | Citrus Genome Database

Overview


Name	BQ623771
Unique Name	BQ623771
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	405

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECO55 (Serine hydroxymethyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECO45 (Serine hydroxymethyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECO27 (Serine hydroxymethyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ECO24 (Serine hydroxymethyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.868e-15
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  315 DNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383

HSP 2 Score: 41.9726 bits (97), Expect = 1.868e-15
Identity = 17/33 (51.52%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+QV  N     +  LE GY++VSGGT
Sbjct:  282 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGT 314

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_SHESR (Serine hydroxymethyltransferase OS=Shewanella sp. (strain MR-7) GN=glyA PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.868e-15
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 294
            +NHL+LV+L  + + G   +  L + +I  NKN+VP D  S  V  G+R+GTPA+T RGF E +
Sbjct:  315 DNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAE 378

HSP 2 Score: 44.669 bits (104), Expect = 1.868e-15
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+KAYQ+QV+ N     +  LE GY++VSGGT
Sbjct:  282 PEFKAYQQQVVKNAKAMVEVFLERGYKIVSGGT 314

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_SHESM (Serine hydroxymethyltransferase OS=Shewanella sp. (strain MR-4) GN=glyA PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.868e-15
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 294
            +NHL+LV+L  + + G   +  L + +I  NKN+VP D  S  V  G+R+GTPA+T RGF E +
Sbjct:  315 DNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAE 378

HSP 2 Score: 44.669 bits (104), Expect = 1.868e-15
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+KAYQ+QV+ N     +  LE GY++VSGGT
Sbjct:  282 PEFKAYQQQVVKNAKAMVEVFLERGYKIVSGGT 314

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_SHESA (Serine hydroxymethyltransferase OS=Shewanella sp. (strain ANA-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.868e-15
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEED 294
            +NHL+LV+L  + + G   +  L + +I  NKN+VP D  S  V  G+R+GTPA+T RGF E +
Sbjct:  315 DNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVTSGVRIGTPAITRRGFKEAE 378

HSP 2 Score: 44.669 bits (104), Expect = 1.868e-15
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+KAYQ+QV+ N     +  LE GY++VSGGT
Sbjct:  282 PEFKAYQQQVVKNAKAMVEVFLERGYKIVSGGT 314

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_POLSQ (Serine hydroxymethyltransferase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.868e-15
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 315
            ++H++LV+L+ K++ G   E VL   HI  NKN +P D    MV  GIR+G+PA+T+RGF E +  +V  F
Sbjct:  312 DSHVMLVDLRAKKMTGKEAEHVLGEAHITCNKNGIPNDPEKPMVTSGIRLGSPAMTTRGFKEAEAVQVGNF 382

HSP 2 Score: 38.1206 bits (87), Expect = 1.868e-15
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV++N    A+TL+  G  +VSGGT
Sbjct:  279 PGFKDYQKQVVANAKALAETLIARGLRIVSGGT 311

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_POLNA (Serine hydroxymethyltransferase OS=Polaromonas naphthalenivorans (strain CJ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.868e-15
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 294
            E+H++LV+L+ K I G   E VL + H+  NKN +P D    MV  G+R+GTPA+T+RGF +E+
Sbjct:  312 ESHVMLVDLRAKGITGKEAEAVLGSAHMTINKNAIPNDPEKPMVTSGVRIGTPAMTTRGFGDEE 375

HSP 2 Score: 38.5058 bits (88), Expect = 1.868e-15
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = 3

Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +PE+K YQ+QVL N    A+TL + G  +VSG T
Sbjct:  278 SPEFKIYQQQVLKNAQIVAETLTQRGLRIVSGRT 311

[Close]

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_GRABC (Serine hydroxymethyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glyA PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.425e-15
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 333
            + HL+LV+L+ K + G   ++ L   HI  NKN +P D     V  GIR+GTPA TSRGF E +F ++    D  V+
Sbjct:  320 DTHLMLVDLRPKNVTGKATDESLGRAHITTNKNAIPFDPQKPAVTSGIRLGTPAGTSRGFGEAEFREIGLMIDRVVE 396

HSP 2 Score: 38.5058 bits (88), Expect = 2.425e-15
Identity = 16/33 (48.48%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P++K YQ+ V +N    A TL+E G  +VSGGT
Sbjct:  287 PDFKTYQQSVANNAKVLASTLVERGLAIVSGGT 319

The following BLAST results are available for this feature:

BLAST of BQ623771 vs. ExPASy Swiss-Prot

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GLYA_ECO55	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECO45	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECO27	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_ECO24	1.868e-15	44.93	Serine hydroxymethyltransferase OS=Escherichia col...	[more]
GLYA_SHESR	1.868e-15	43.75	Serine hydroxymethyltransferase OS=Shewanella sp. ...	[more]
GLYA_SHESM	1.868e-15	43.75	Serine hydroxymethyltransferase OS=Shewanella sp. ...	[more]
GLYA_SHESA	1.868e-15	43.75	Serine hydroxymethyltransferase OS=Shewanella sp. ...	[more]
GLYA_POLSQ	1.868e-15	43.66	Serine hydroxymethyltransferase OS=Polynucleobacte...	[more]
GLYA_POLNA	1.868e-15	46.88	Serine hydroxymethyltransferase OS=Polaromonas nap...	[more]
GLYA_GRABC	2.425e-15	41.56	Serine hydroxymethyltransferase OS=Granulibacter b...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT