BQ623771

Overview
NameBQ623771
Unique NameBQ623771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:454..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.895e-27
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKS---ETQGTKLKDFVA 390
            + HLVLV+L +K +DG+RVE++LE V+I+ANKNTVPGD SA++P G+R+GTPA T+RGF E+DF +V    D  V L  KI     +   +K +DF A
Sbjct:  346 DTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDFKA 443          

HSP 2 Score: 40.817 bits (94), Expect = 1.895e-27
Identity = 18/34 (52.94%), Postives = 22/34 (64.71%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            TPE+  YQ+ VLSN    A   +  GY+LVSGGT
Sbjct:  312 TPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGT 345          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.895e-27
Identity = 50/97 (51.55%), Postives = 72/97 (74.23%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVA 390
            ++H+VLV+L+ K +DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + D AVK A + +S    +  KLKDF A
Sbjct:  346 DSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKA 442          

HSP 2 Score: 37.7354 bits (86), Expect = 1.895e-27
Identity = 17/34 (50.00%), Postives = 19/34 (55.88%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            TPE+K YQ QVL N          +GY LVS GT
Sbjct:  312 TPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGT 345          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 1.199e-26
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATT 396
            +NHL+LV+L+   ++G+R E +L+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV  F    V++A K  +E  G  LKDF A T
Sbjct:  384 DNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKAFT 479          

HSP 2 Score: 31.5722 bits (70), Expect = 1.199e-26
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 3
Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++  Y EQ+L N    A+ L + GY L +GGT
Sbjct:  352 DFVQYGEQILKNAKTLAERLKKHGYSLATGGT 383          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.560e-26
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQS 402
            +NHL+LV+L+   ++G+R E VL+  HIA NKNT PGDVSA+ PGGIR+GTPALTSRGF E+DF KV  F    V++A K  +E  G  LKDF + T++
Sbjct:  380 DNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQIAKKYNAEA-GKTLKDFKSFTET 477          

HSP 2 Score: 30.8018 bits (68), Expect = 1.560e-26
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 3
Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++  Y EQVL N    A+ + + GY L +GGT
Sbjct:  348 DFVQYGEQVLKNAKTLAERMKKHGYALATGGT 379          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.831e-26
Identity = 45/84 (53.57%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE 357
            + HL+L++L    IDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF   +F +VA + + AVKLA+ +KS+
Sbjct:  369 DTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ 452          

HSP 2 Score: 38.891 bits (89), Expect = 5.831e-26
Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            TPE+K YQ  V+ N   F + L + G+ LVSGGT
Sbjct:  335 TPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGT 368          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.888e-26
Identity = 48/100 (48.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVATTQ 399
            ++H+VLV+L+ K +DG+RVE V E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDFA++  + + AV++A  I+     +  +LKDF A  +
Sbjct:  346 DSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVE 445          

HSP 2 Score: 33.4982 bits (75), Expect = 9.888e-26
Identity = 15/34 (44.12%), Postives = 19/34 (55.88%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            TPE++ YQE VL N         ++ Y LVS GT
Sbjct:  312 TPEFREYQELVLKNAKVLETEFKKLNYRLVSDGT 345          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.379e-24
Identity = 49/97 (50.52%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVA 390
            ++H+VLV++K+K +DG+R E+VLE ++I  NKNTVP D SA  P GIR+GTPA+T+RGF E+DF +V  + D A+  A  ++ E      KLKDF A
Sbjct:  340 DSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKA 436          

HSP 2 Score: 30.4166 bits (67), Expect = 1.379e-24
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P YK YQ QV+ N     +   + GY+L + GT
Sbjct:  307 PAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGT 339          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.046e-23
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   16 KPIKSKF*AIARNLHRLCSRWAMNLFLVEPENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVA 390
            K  + K  A A+ L +        L     ++H+VLV+L+   +DG+RVE +LE ++I  NKN VPGD SA+ PGG+R+GTPA+TSRGF E DF KVA F D AVKL  +I++    +  K KDF A
Sbjct:  317 KEYQQKVVANAKALEKKLKELGYKLVSDGTDSHMVLVDLRPIGVDGARVEFLLEQINITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANKQKDFKA 443          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.312e-23
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDF 384
            +NHLVL +L+ + I GS++EK  +  HI  NKN V GD +A+ PGG+R+G PALTSRG  E+DF KV  F D  VK+++ I+S+  G K+ DF
Sbjct:  360 DNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKV-GKKMPDF 451          

HSP 2 Score: 29.261 bits (64), Expect = 9.312e-23
Identity = 12/34 (35.29%), Postives = 20/34 (58.82%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +P+++ Y +QV  N     + L + GY LV+ GT
Sbjct:  326 SPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGT 359          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.616e-21
Identity = 54/133 (40.60%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 LLQSIKPIKSKF*AIARNL-HRLCSRWAMNLFLVEPENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGTKLKDFVA 390
            +L++ K ++S+F    +NL +RL S           ++H+VLV+L+ K +DG+RVE + E ++IA NKN++PGD SA+VPGG+R+G PA+T+RG  EEDF ++  + + AV+ A +++        +LKDF A
Sbjct:  322 VLKNAKALESEF----KNLGYRLVSNGT--------DSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKA 442          
The following BLAST results are available for this feature:
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_SCHPO1.895e-2752.04Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_CANGA1.895e-2751.55Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_CAEBR1.199e-2656.70Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEEL1.560e-2655.56Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_ASHGO5.831e-2653.57Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ASHGO9.888e-2648.00Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYD_SCHPO1.379e-2450.52Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_NEUCR5.046e-2346.46Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYC2_DICDI9.312e-2350.54Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_YEAST3.616e-2140.60Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT
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