BQ623771 | Citrus Genome Database

Overview


Name	BQ623771
Unique Name	BQ623771
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	405

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACCR (Serine hydroxymethyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.507e-13
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+L++++N  I G   E VL+ V I  NKNT+P +  S  V  G+R+GT A+TSRGF  E+  ++A
Sbjct:  310 DNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEEMDEIA 378

HSP 2 Score: 31.9574 bits (71), Expect = 3.507e-13
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 3

Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++K Y + +++N ++ A+ L + G  LVSGGT
Sbjct:  278 DFKTYAQNIINNANRLAEGLQKEGLTLVSGGT 309

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACCQ (Serine hydroxymethyltransferase OS=Bacillus cereus (strain Q1) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.507e-13
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+L++++N  I G   E VL+ V I  NKNT+P +  S  V  G+R+GT A+TSRGF  E+  ++A
Sbjct:  309 DNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEEMDEIA 377

HSP 2 Score: 31.9574 bits (71), Expect = 3.507e-13
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 3

Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++K Y + +++N ++ A+ L + G  LVSGGT
Sbjct:  277 DFKTYAQNIINNANRLAEGLQKEGLTLVSGGT 308

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACC7 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain AH187) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.507e-13
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+L++++N  I G   E VL+ V I  NKNT+P +  S  V  G+R+GT A+TSRGF  E+  ++A
Sbjct:  309 DNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEEMDEIA 377

HSP 2 Score: 31.9574 bits (71), Expect = 3.507e-13
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 3

Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++K Y + +++N ++ A+ L + G  LVSGGT
Sbjct:  277 DFKTYAQNIINNANRLAEGLQKEGLTLVSGGT 308

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACC2 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain G9842) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.507e-13
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+L++++N  I G   E VL+ V I  NKNT+P +  S  V  G+R+GT A+TSRGF  E+  ++A
Sbjct:  309 DNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEEMDEIA 377

HSP 2 Score: 31.9574 bits (71), Expect = 3.507e-13
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 3

Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++K Y + +++N ++ A+ L + G  LVSGGT
Sbjct:  277 DFKTYAQNIINNANRLAEGLQKEGLTLVSGGT 308

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACC1 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.507e-13
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+L++++N  I G   E VL+ V I  NKNT+P +  S  V  G+R+GT A+TSRGF  E+  ++A
Sbjct:  309 DNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTAAVTSRGFGLEEMDEIA 377

HSP 2 Score: 31.9574 bits (71), Expect = 3.507e-13
Identity = 12/32 (37.50%), Postives = 22/32 (68.75%), Query Frame = 3

Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++K Y + +++N ++ A+ L + G  LVSGGT
Sbjct:  277 DFKTYAQNIINNANRLAEGLQKEGLTLVSGGT 308

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACP2 (Serine hydroxymethyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.507e-13
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 333
            +NHLVL++L++  I G   E VL+ + I  NKN +P D     V  G+R+GT A+TSRGF +E   +V      A+K
Sbjct:  309 DNHLVLIDLRSLGITGKIAENVLDEIGITVNKNAIPYDPEKPFVTSGVRVGTAAVTSRGFDQEAMKEVGSIIALALK 385

HSP 2 Score: 34.2686 bits (77), Expect = 3.507e-13
Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 3

Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            ++K Y + V+ N  + A+TLL    +LVSGGT
Sbjct:  277 DFKTYAQNVIDNAKQLAETLLSEDIQLVSGGT 308

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BRASO (Serine hydroxymethyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glyA PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.550e-13
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 306
            +NHL+LV+L+ K + G+  EK L    I  NKN +P D     V  G+R+GTPA T+RGF   +F +V
Sbjct:  325 DNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNGIPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQV 392

HSP 2 Score: 38.1206 bits (87), Expect = 4.550e-13
Identity = 15/33 (45.45%), Postives = 23/33 (69.70%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+KAY + V+ N    A++L   G+++VSGGT
Sbjct:  292 PEFKAYAKNVVENAKALAESLRAQGFDIVSGGT 324

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_PARDP (Serine hydroxymethyltransferase OS=Paracoccus denitrificans (strain Pd 1222) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.551e-13
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL L +L+ K + G   E  L   HI  NKN VP D     V  GIR+G PA T+RGF E++F ++A
Sbjct:  317 DNHLCLADLRPKGVTGKATEAALGRAHITCNKNGVPFDPEKPFVTSGIRLGAPAGTTRGFKEDEFRQIA 385

HSP 2 Score: 33.8834 bits (76), Expect = 4.551e-13
Identity = 14/33 (42.42%), Postives = 22/33 (66.67%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P++K Y  QV++N    A  L++ G ++VSGGT
Sbjct:  284 PDFKDYAAQVVANARAMADELMKGGIDIVSGGT 316

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 4.551e-13
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRID--GSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 330
            +NH +LV+L++K  D  G   EK L +  I  NKN VP D  SA    GIR+GTPA+T+RG  E+   ++A   +  +
Sbjct:  321 DNHSMLVDLRSKYPDLTGKVAEKALVSADITVNKNMVPFDSRSAFQTSGIRLGTPAITTRGAKEDLMIEIAEMIETVL 398

HSP 2 Score: 40.0466 bits (92), Expect = 4.551e-13
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYK Y +QV  N +  AQ L++ G+ +VSGGT
Sbjct:  288 PEYKEYAKQVQKNAAILAQALIDRGFTIVSGGT 320

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_PROM2 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=glyA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.552e-13
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1

Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 306
            +NH+VL++L++  + G   + ++  V+I ANKNTVP D  S  V  G+R+GT ALT+RGF E  F +V
Sbjct:  313 DNHIVLLDLRSINMTGKIADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFNENAFEEV 380

HSP 2 Score: 34.6538 bits (78), Expect = 4.552e-13
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3

Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P++  Y +QV+ N    A TL+  G  +VSGGT
Sbjct:  280 PDFVNYSQQVIKNAKVLASTLINRGINIVSGGT 312

The following BLAST results are available for this feature:

BLAST of BQ623771 vs. ExPASy Swiss-Prot

BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GLYA_BACCR	3.507e-13	44.93	Serine hydroxymethyltransferase OS=Bacillus cereus...	[more]
GLYA_BACCQ	3.507e-13	44.93	Serine hydroxymethyltransferase OS=Bacillus cereus...	[more]
GLYA_BACC7	3.507e-13	44.93	Serine hydroxymethyltransferase OS=Bacillus cereus...	[more]
GLYA_BACC2	3.507e-13	44.93	Serine hydroxymethyltransferase OS=Bacillus cereus...	[more]
GLYA_BACC1	3.507e-13	44.93	Serine hydroxymethyltransferase OS=Bacillus cereus...	[more]
GLYA_BACP2	3.507e-13	41.56	Serine hydroxymethyltransferase OS=Bacillus pumilu...	[more]
GLYA_BRASO	4.550e-13	44.12	Serine hydroxymethyltransferase OS=Bradyrhizobium ...	[more]
GLYA_PARDP	4.551e-13	44.93	Serine hydroxymethyltransferase OS=Paracoccus deni...	[more]
GLYA_BACTN	4.551e-13	41.03	Serine hydroxymethyltransferase OS=Bacteroides the...	[more]
GLYA_PROM2	4.552e-13	45.59	Serine hydroxymethyltransferase OS=Prochlorococcus...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT