BQ623771

Overview
NameBQ623771
Unique NameBQ623771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_RHOP5 (Serine hydroxymethyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glyA PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 9.966e-13
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKV 306
            +NHL+LV+L+ K + G+  EK L    I  NKN +P D     V  GIR+GTPA T+RGF   +F +V
Sbjct:  325 DNHLMLVDLRPKALKGNVSEKALVRAGITCNKNGIPFDPEKPFVTSGIRLGTPAATTRGFGVAEFQQV 392

HSP 2 Score: 35.8094 bits (81), Expect = 9.966e-13
Identity = 14/33 (42.42%), Postives = 22/33 (66.67%), Query Frame = 3 
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P++K Y + V+ N    A+TL   G+++VSGGT
Sbjct:  292 PDFKVYAKNVVENAKALAETLRGHGFDIVSGGT 324
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_PROMM (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=glyA PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 9.968e-13
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHLVL++L++  + G   + ++  V+I ANKNTVP D  S  V  G+R+GT ALT+RGF +E F +VA
Sbjct:  319 DNHLVLLDLRSIGMTGKVADLLVSEVNITANKNTVPFDPESPFVTSGLRLGTAALTTRGFDDEAFREVA 387

HSP 2 Score: 31.187 bits (69), Expect = 9.968e-13
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE++ Y  QV++N    A  + E G  +VSGGT
Sbjct:  286 PEFQVYSCQVVANAQVLAGRIQERGIAVVSGGT 318
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_THICR (Serine hydroxymethyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 9.972e-13
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            ENHL LV+   + + G  V+  L   HI  NKN+VP D +S  V  GIR+GT A T+RGF EED   +A
Sbjct:  315 ENHLFLVSFIEQGLTGKLVDAALGEAHITINKNSVPNDPMSPFVTSGIRVGTAASTTRGFTEEDSKNLA 383

HSP 2 Score: 31.5722 bits (70), Expect = 9.972e-13
Identity = 13/33 (39.39%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K Y +QV  N    A   +  G+++VS GT
Sbjct:  282 PEFKTYAKQVKVNAKAMADVFMARGFDVVSKGT 314
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_WIGBR (Serine hydroxymethyltransferase OS=Wigglesworthia glossinidia brevipalpis GN=glyA PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 9.974e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL ++NL N  + G    ++LE  +I  NKN++P D ++  +  GIR+GTPA+T RGF E +  KVA
Sbjct:  315 KNHLFILNLSNIGLKGDLASEILEKANITVNKNSIPNDKLNPKITSGIRIGTPAITKRGFKEIESKKVA 383

HSP 2 Score: 30.0314 bits (66), Expect = 9.974e-13
Identity = 12/34 (35.29%), Postives = 20/34 (58.82%), Query Frame = 3 
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            T ++K YQ Q++ N     +  L+  + +VSGGT
Sbjct:  281 TLKFKKYQHQLVKNSKSMVEIFLKRKFHVVSGGT 314
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_MYCS5 (Serine hydroxymethyltransferase OS=Mycoplasma synoviae (strain 53) GN=glyA PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 9.974e-13
Identity = 30/70 (42.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:  106 ENHLVLVNLKNK-RIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVE-EDFAKV 306
            +NHL+L+N+K+   I G   E  LE ++I  NKN++P D +  +V  GIR+GT A+TSR F + E+ A++
Sbjct:  310 DNHLLLINVKSSYNITGKEAENFLEKINITINKNSIPFDELPPLVTSGIRLGTAAMTSRNFTKWEELAEI 379

HSP 2 Score: 35.8094 bits (81), Expect = 9.974e-13
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K Y E ++ N   F++  ++ G E+VSGGT
Sbjct:  277 PSFKTYAENIVKNAKVFSEAFIKKGVEVVSGGT 309
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_HAEPS (Serine hydroxymethyltransferase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=glyA PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 9.974e-13
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF-----------DAAVKLAVKIK 351
            ENHL LV+L +  + G   +  L   +I  NKN VP D     +  GIR+GTP++T RGF E +  ++A +            +AAV  A K+K
Sbjct:  315 ENHLFLVDLVSHGLTGKAADAALGKANITVNKNAVPNDPQKPFITSGIRVGTPSVTRRGFKEAEVRELAGWMCDVLDNIGKDNEAAVIEATKVK 408

HSP 2 Score: 38.1206 bits (87), Expect = 9.974e-13
Identity = 15/33 (45.45%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYK YQ+QV+ N     +   + GY +VS GT
Sbjct:  282 PEYKVYQQQVVKNAKAMVEVFKQRGYNVVSNGT 314
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_LACS1 (Serine hydroxymethyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glyA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.976e-13
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+L++++N  ++G   EK+L+ V+I  NKN++P + +S     GIR+GTPA+TSRGF EED  +VA
Sbjct:  310 DNHLLLLDVRNFGLNGKEAEKLLDQVNITVNKNSIPFETLSPFKTSGIRIGTPAITSRGFNEEDSYQVA 378

HSP 2 Score: 25.0238 bits (53), Expect = 9.976e-13
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 3 
Query:    3 TPEYKAYQEQVLSNCSKFA 59
            TPE+K Y EQ++ N  + A
Sbjct:  275 TPEFKEYGEQIIRNTQEMA 293
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 9.976e-13
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 333
            +NHL+L++L++ ++ G   EK L+AV I  NKN +P D     V  GIR+GT A+TSRGF E +  ++       +K
Sbjct:  313 DNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGELIALTLK 389

HSP 2 Score: 32.7278 bits (73), Expect = 9.976e-13
Identity = 12/32 (37.50%), Postives = 21/32 (65.62%), Query Frame = 3 
Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            E+K Y +Q+++N  +  + L   G ++VSGGT
Sbjct:  281 EFKTYAKQIIANAKRLGEKLQAEGVDIVSGGT 312
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_SODGM (Serine hydroxymethyltransferase OS=Sodalis glossinidius (strain morsitans) GN=glyA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.976e-13
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL L++L +K + G   +  L   +I  NKN+VP D  S  V  G+R+GTPA+T RGF E D   +A
Sbjct:  315 DNHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGMRIGTPAVTRRGFTEADVRDLA 383

HSP 2 Score: 33.4982 bits (75), Expect = 9.976e-13
Identity = 13/33 (39.39%), Postives = 18/33 (54.55%), Query Frame = 3 
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV  N     +  L  G+ +VSG T
Sbjct:  282 PAFKTYQQQVAKNAKAMVEVFLSRGFNVVSGAT 314
[Close]
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_DESAH (Serine hydroxymethyltransferase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=glyA PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 9.976e-13
Identity = 37/96 (38.54%), Postives = 49/96 (51.04%), Query Frame = 1 
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA 390
            +NHL+L+NL +  I G   E  L A  I  NKN VP D    M+  GIR+GTP +T+RG  E +   VA     A  L     +ET   K++   A
Sbjct:  311 DNHLMLLNLTHNGISGKDAENRLGAAGITVNKNAVPNDPRGPMITSGIRIGTPLVTTRGMGETEMDLVAELITQA--LEAPATAETVREKVRSLCA 404

HSP 2 Score: 34.6538 bits (78), Expect = 9.976e-13
Identity = 14/34 (41.18%), Postives = 22/34 (64.71%), Query Frame = 3 
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +P +  YQ QV++N +  A  L++ G +LVS GT
Sbjct:  277 SPSFAQYQRQVVANAATLADALMDRGMKLVSNGT 310
The following BLAST results are available for this feature:
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RHOP59.966e-1345.59Serine hydroxymethyltransferase OS=Rhodopseudomona... [more]
GLYA_PROMM9.968e-1347.83Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_THICR9.972e-1347.83Serine hydroxymethyltransferase OS=Thiomicrospira ... [more]
GLYA_WIGBR9.974e-1343.48Serine hydroxymethyltransferase OS=Wigglesworthia ... [more]
GLYA_MYCS59.974e-1342.86Serine hydroxymethyltransferase OS=Mycoplasma syno... [more]
GLYA_HAEPS9.974e-1336.17Serine hydroxymethyltransferase OS=Haemophilus par... [more]
GLYA_LACS19.976e-1347.83Serine hydroxymethyltransferase OS=Lactobacillus s... [more]
GLYA_BACSK9.976e-1340.26Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA_SODGM9.976e-1343.48Serine hydroxymethyltransferase OS=Sodalis glossin... [more]
GLYA_DESAH9.976e-1338.54Serine hydroxymethyltransferase OS=Desulfobacteriu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT
back to top