BQ623771

Overview
NameBQ623771
Unique NameBQ623771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig809 contig Csv1_Contig809:454..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.814e-17
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSE 357
            +NHL L++L  + I G   +  L A HI  NKN+VP D  S  V  GIR+GTPA+T+RGF E +   +A +         D AV   VK K E
Sbjct:  314 KNHLFLLSLIKQDITGKDADAWLGAAHITVNKNSVPNDPRSPFVTSGIRIGTPAVTTRGFGEAEVRDLASWIADILDSKGDEAVINTVKAKVE 406          

HSP 2 Score: 48.521 bits (114), Expect = 2.814e-17
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PEYKAYQ+QV+ N    A+ L+E GY++VSGGT
Sbjct:  281 PEYKAYQQQVVKNAQAMAEVLIERGYDVVSGGT 313          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFA (Serine hydroxymethyltransferase OS=Xylella fastidiosa GN=glyA PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 3.658e-17
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSETQGTK 372
            ENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E+D   +A++         DA V  AV+ K   Q  K
Sbjct:  315 ENHLMLVDMIGRDVSGKDAEGALGQAHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWIADVLDAPADATVIAAVREKVAAQCRK 412          

HSP 2 Score: 41.9726 bits (97), Expect = 3.658e-17
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV+ N    A+TL+  GY++VSGGT
Sbjct:  282 PAFKVYQQQVVKNAKAMAETLMLRGYKIVSGGT 314          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_DICTD (Serine hydroxymethyltransferase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=glyA PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.658e-17
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA--------YFFDAAVKLAVKIKSE 357
            +NHL+LV+L++K I G   EK LE   I  NKN +P D     +  GIR+GTPALT+RG  E++   +A         F D  VK  VK + E
Sbjct:  309 DNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTITSGIRIGTPALTTRGMKEDEMRYIARLIHEVLSNFKDERVKEKVKKEVE 401          

HSP 2 Score: 43.5134 bits (101), Expect = 3.658e-17
Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +PE+K YQ+Q++ N    A+ L+++GY LVSGGT
Sbjct:  275 SPEFKEYQKQIVLNAKAMAEELIKLGYRLVSGGT 308          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_ONYPE (Serine hydroxymethyltransferase OS=Onion yellows phytoplasma GN=glyA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.755e-17
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRID--GSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAV 330
            +NHL L+++K+K  +  GS++  +LE ++I  NKNT+P D     V  GIR+GTPA+T+ GF E DF  VA   D A+
Sbjct:  314 DNHLFLIDVKHKNPEFTGSKIANMLEKINIVVNKNTIPFDQEKPFVTSGIRIGTPAMTTVGFRENDFILVADLMDKAI 391          

HSP 2 Score: 40.817 bits (94), Expect = 4.755e-17
Identity = 16/33 (48.48%), Postives = 23/33 (69.70%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV+ N + FA+   + GY +VSGGT
Sbjct:  281 PSFKEYQKQVIKNANTFAKAFQQKGYRIVSGGT 313          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFM (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M12) GN=glyA PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 4.755e-17
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSETQGTK 372
            ENHL+LV++  + + G   E  L   HI  NKN VP D  S  V  G+R+GTPA+T+RG+ E+D   +A++         DA V  AV+ K   Q  K
Sbjct:  315 ENHLMLVDMIGRDVSGRDAEGALGQAHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWIADVLDAPADATVIAAVREKVAAQCKK 412          

HSP 2 Score: 41.9726 bits (97), Expect = 4.755e-17
Identity = 17/33 (51.52%), Postives = 24/33 (72.73%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            P +K YQ+QV+ N    A+TL+  GY++VSGGT
Sbjct:  282 PAFKVYQQQVVKNAKAMAETLMLRGYKIVSGGT 314          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.756e-17
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 309
            +NHL+LV+L    + G  +EK+L+A HI ANKNT+P D     V  GIR+GTPA TSRG  E+DF KVA
Sbjct:  313 DNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVA 381          

HSP 2 Score: 32.3426 bits (72), Expect = 4.756e-17
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 3
Query:    6 PEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            PE+K YQ+Q++ N     + L   G ++VS GT
Sbjct:  280 PEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGT 312          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.757e-17
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   85 NLFLVEPENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQ 363
            NL     +NHL+L++L+N  I G   E +L+  +I  NKNTVP D  S  V  GIR+GTPA+T+RGF E+D A VA      VK   K K + +
Sbjct:  306 NLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAISLVVKDVDKNKEQAK 399          

HSP 2 Score: 30.4166 bits (67), Expect = 4.757e-17
Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 3
Query:   12 YKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +K Y  +++SN    A  L   G+ LVSGGT
Sbjct:  282 FKDYAGKIISNAGALANELTARGFNLVSGGT 312          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.037e-17
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 312
            E+H++LV+L+ K I G   EKVL   HI  NKN +P D     V  GIR+G+PA+T+RGF E +  KVA+
Sbjct:  313 ESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAH 382          

HSP 2 Score: 38.891 bits (89), Expect = 8.037e-17
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +P +KAYQEQV+ N    A+TL+  G  +VSG T
Sbjct:  279 SPTFKAYQEQVVKNARAMAETLMARGLRIVSGRT 312          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA1_RALEJ (Serine hydroxymethyltransferase 1 OS=Ralstonia eutropha (strain JMP134) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.037e-17
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 294
            E+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+
Sbjct:  313 ESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEE 376          

HSP 2 Score: 43.1282 bits (100), Expect = 8.037e-17
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 3
Query:    3 TPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            TPE+KAYQEQV+ N +  A+TL+  G  +VSG T
Sbjct:  279 TPEFKAYQEQVVKNAAVLAETLIARGLRIVSGRT 312          
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Match: GLYA_CLONN (Serine hydroxymethyltransferase OS=Clostridium novyi (strain NT) GN=glyA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.038e-17
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  106 ENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 333
            +NHL+L++L NK I G   EK+L+++ I  NKNT+P +  S  V  GIR+GTPA+T+RGF EE+  ++AY  +  ++
Sbjct:  311 DNHLLLIDLTNKDITGKDAEKLLDSIGITVNKNTIPFETKSPFVTSGIRIGTPAVTTRGFKEEEMKEIAYLINYVIE 387          

HSP 2 Score: 31.187 bits (69), Expect = 8.038e-17
Identity = 14/32 (43.75%), Postives = 20/32 (62.50%), Query Frame = 3
Query:    9 EYKAYQEQVLSNCSKFAQTLLEMGYELVSGGT 104
            +YK Y EQV+ N     + L +  ++LVSGGT
Sbjct:  279 DYKNYIEQVVKNAKVLEEELKKYDFKLVSGGT 310          
The following BLAST results are available for this feature:
BLAST of BQ623771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ACIRA2.814e-1741.94Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA_XYLFA3.658e-1739.80Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_DICTD3.658e-1741.94Serine hydroxymethyltransferase OS=Dictyoglomus tu... [more]
GLYA_ONYPE4.755e-1744.87Serine hydroxymethyltransferase OS=Onion yellows p... [more]
GLYA_XYLFM4.755e-1739.80Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_EUBR34.756e-1755.07Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_CLOPH4.757e-1744.68Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA1_RALSO8.037e-1748.57Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA1_RALEJ8.037e-1745.31Serine hydroxymethyltransferase 1 OS=Ralstonia eut... [more]
GLYA_CLONN8.038e-1745.45Serine hydroxymethyltransferase OS=Clostridium nov... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00862 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00862 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623771 ID=BQ623771; Name=BQ623771; organism=Citrus sinensis; type=EST; length=405bp
CTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCG
AAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGG
AACCTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGAT
GGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAA
AAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGA
TGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCC
AAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAA
GTCTGAAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGT
CCGCT
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