BQ623775

Overview
NameBQ623775
Unique NameBQ623775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.473e-30
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E E+IR+KYPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   17 EGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.473e-30
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E E+IR+KYPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   17 EGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.473e-30
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E E+IR+KYPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   17 EGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.473e-30
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E E+IR+KYPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   17 EGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.473e-30
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E E+IR+KYPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   17 EGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.473e-30
Identity = 59/100 (59.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E E+IR+KYPDR+PVIVEKA ++ +P +DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   17 EGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.189e-29
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E E+IR+KYPDR+P+IVEKA ++ +P +D++KYLVP+DLT GQF  +IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   17 EGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 3
Query:   57 NSRKGVPEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            N  K   E ++IR KYPDRIPVIVEKA +S +  +DKKKYLVP+DLTVGQF ++IRKRI+L  E A+F FV+NV+P T   M  +Y +  +ED FLY+ YS E+ +G
Sbjct:   10 NFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.937e-28
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E+  I  KYP RIPVI EK  ++D+P I+KKK+LVP D++VGQF+Y++  R+ LS  KA+F+FV+N LP T A+M ++Y+  KD+DGF+Y+ YS E TFG
Sbjct:   16 ESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.566e-27
Identity = 54/107 (50.47%), Postives = 78/107 (72.90%), Query Frame = 3
Query:   57 NSRKGVPEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            +S + + E+  I  KYPDRIPVI+EK   +D+P ++K KYLVP D+TVG F++++ KR++L   KA+F+FV N LP T + M ++Y+  K+EDGFLY+ YS E TFG
Sbjct:   13 SSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
The following BLAST results are available for this feature:
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GBRL1_XENLA1.473e-3059.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT1.473e-3059.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE1.473e-3059.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN1.473e-3059.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO1.473e-3059.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN1.473e-3059.00Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL3_HUMAN6.189e-2956.00Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL1.379e-2856.07Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8I_ARATH8.937e-2854.00Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
ATG8H_ARATH7.566e-2750.47Autophagy-related protein 8h OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00866 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00866 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623775 ID=BQ623775; Name=BQ623775; organism=Citrus sinensis; type=EST; length=582bp
ATATTATATATGATAATTAACGACAATGAGTAAAAGCAACTTCAAGATTG
AGCATGAATTCGAGAAAAGGCGTGCCTGAGGCGGAAAGAATTAGGGAGAA
ATACCCAGATAGAATTCCGGTGATAGTGGAAAAGGCTGAGAGAAGTGATA
TTCCTACAATTGACAAGAAAAAATATTTAGTCCCTGCTGACTTAACAGTG
GGTCAGTTTGTGTATGTGATACGGAAGAGAATTAAACTGAGCGCAGAAAA
GGCAATCTTTATATTTGTGGACAATGTTCTCCCGCCTACAGGAGCAATAA
TGTCTACCATATATGATGAAAAGAAGGATGAAGATGGGTTTCTCTATGTT
ACTTACAGTGGTGAAAACACATTTGGATAGCATAATCTGCCGCTACCCTT
TTTCCTCTACCAACGTTTCGTTTGTTAATCTACTCATCTTGAATTTAGTG
TTTCTGTTTTCTGGCTTTGTGCCGGTCATAATCCGGCTTCTTATTTACAT
GACCTTTTATGCTTGTATATAGCCGGTTCAAACTATGTGGGATCAGACTG
ATGATTGCGAATAATTTAAATTCGATGGAAGT
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