BQ623775

Overview
NameBQ623775
Unique NameBQ623775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 53/101 (52.48%), Postives = 75/101 (74.26%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDEKKDE-DGFLYVTYSGENTFG 377
            E+  +   YPDRIPVIVEK  RS++P ++K+KYLVP ++ VGQF++++R R+ LS   A+F+FV+N LP T  +M ++Y+  KDE DGFLY+ YS E TFG
Sbjct:   18 ESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3
Query:   51 SMNSRKGVPEAERIREKYPDRIPVIVEKAERSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLS---AEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            S+  RK +  + +IR +Y DR+P+IVE+A  SD+P I+KKK+L P+++ +  F+  IRK +  S    +KAIF+FV+ N LPP+  ++S+IYD  KDEDGFLY+ YSGENTFG
Sbjct:   13 SLEKRKLI--SSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.294e-18
Identity = 47/102 (46.08%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAERSD-IPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E   IR K+P++IPV+VE+  R   +P +DK K+LVP +LT+ QF+ +IR R+ L A +A ++ V+N  L    A M+ IY + KDEDGF+Y+TY+ + TFG
Sbjct:   25 EVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.270e-17
Identity = 39/102 (38.24%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E ++IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IY+++KDEDGFLY+ Y+ + TFG
Sbjct:   19 EVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.211e-16
Identity = 39/104 (37.50%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   72 VPEAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            V +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ +KDEDGFLY+ Y+ + TFG
Sbjct:   17 VEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 38/102 (37.25%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E ++IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IY+++KDEDGFLY+ Y+ + TFG
Sbjct:   19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 38/102 (37.25%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E ++IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IY+++KDEDGFLY+ Y+ + TFG
Sbjct:   19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.065e-16
Identity = 38/102 (37.25%), Postives = 71/102 (69.61%), Query Frame = 3
Query:   78 EAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            E ++IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V +IR+R++L+  +A F+ V+ + +      ++ IY+++KDEDGFLY+ Y+ + TFG
Sbjct:   19 EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.697e-16
Identity = 38/104 (36.54%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   72 VPEAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            V +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct:   17 VEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.697e-16
Identity = 38/104 (36.54%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   72 VPEAERIREKYPDRIPVIVEKAE-RSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NVLPPTGAIMSTIYDEKKDEDGFLYVTYSGENTFG 377
            V +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + +IR+R++L+A +A F+ V+ + +      +S +Y+ ++DEDGFLY+ Y+ + TFG
Sbjct:   17 VEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
The following BLAST results are available for this feature:
BLAST of BQ623775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8D_ORYSJ8.365e-2652.48Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
ATG8L_DICDI3.179e-2550.44Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3C_HUMAN1.294e-1846.08Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN9.270e-1738.24Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN1.211e-1637.50Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT2.065e-1637.25Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_MOUSE2.065e-1637.25Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN2.065e-1637.25Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT2.697e-1636.54Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE2.697e-1636.54Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00866 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00866 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623775 ID=BQ623775; Name=BQ623775; organism=Citrus sinensis; type=EST; length=582bp
ATATTATATATGATAATTAACGACAATGAGTAAAAGCAACTTCAAGATTG
AGCATGAATTCGAGAAAAGGCGTGCCTGAGGCGGAAAGAATTAGGGAGAA
ATACCCAGATAGAATTCCGGTGATAGTGGAAAAGGCTGAGAGAAGTGATA
TTCCTACAATTGACAAGAAAAAATATTTAGTCCCTGCTGACTTAACAGTG
GGTCAGTTTGTGTATGTGATACGGAAGAGAATTAAACTGAGCGCAGAAAA
GGCAATCTTTATATTTGTGGACAATGTTCTCCCGCCTACAGGAGCAATAA
TGTCTACCATATATGATGAAAAGAAGGATGAAGATGGGTTTCTCTATGTT
ACTTACAGTGGTGAAAACACATTTGGATAGCATAATCTGCCGCTACCCTT
TTTCCTCTACCAACGTTTCGTTTGTTAATCTACTCATCTTGAATTTAGTG
TTTCTGTTTTCTGGCTTTGTGCCGGTCATAATCCGGCTTCTTATTTACAT
GACCTTTTATGCTTGTATATAGCCGGTTCAAACTATGTGGGATCAGACTG
ATGATTGCGAATAATTTAAATTCGATGGAAGT
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