BQ623776

Overview
NameBQ623776
Unique NameBQ623776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623776_ssr314 microsatellite BQ623776_ssr314:314..325. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5380 contig Csv1_Contig5380:150..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.948e-34
Identity = 82/180 (45.56%), Postives = 108/180 (60.00%), Query Frame = 1
Query:   10 PVYTLEMCMTWFGQKEGICLLQN**KPQWPL---MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLK--GYSCGEKIYEELGNNGSLIYYSFSRTD----CSTSPRSILKC 522
            P+ TLEMCMT   +++     +            MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG+D   +    L++RVL CF P+EFSVA+ +   G  H  T+  +L    Y C   + +EL   G LIY SF  T+       SP+S+L C
Sbjct:  183 PMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAV-TIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHC 361          
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.578e-34
Identity = 82/180 (45.56%), Postives = 108/180 (60.00%), Query Frame = 1
Query:   10 PVYTLEMCMTWFGQKEGICLLQN**KPQWPL---MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLK--GYSCGEKIYEELGNNGSLIYYSFSRTD----CSTSPRSILKC 522
            P+ TLEMCMT   +++     +            MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG+D   +    L++RVL CF P+EFSVA+ +   G  H  T+  +L    Y C   + +EL   G LIY SF  T+       SP+S+L C
Sbjct:  183 PMVTLEMCMTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGLAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAV-TIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHC 361          
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.911e-33
Identity = 79/178 (44.38%), Postives = 107/178 (60.11%), Query Frame = 1
Query:   10 PVYTLEMCMTWFGQKEGICLLQN**KPQWPL---MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTF--MLDLKGYSCGEKIYEELGNNGSLIYYSFSRTD--CSTSPRSILKC 522
            P+  LEMCMT   +K+     +            MT+ SGI +I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E +G D   +    L++RVL CF P+EFSVA+ +   G  H  T+   L  + Y C   + +EL   G L+Y SF   +   +TSP+S+  C
Sbjct:  183 PMVNLEMCMTGLDKKKACVFFKTNADGNTTCAKEMTKLSGISEIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVMGLDATALSYGDLVKRVLRCFGPSEFSVAV-TIFGGRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAVATSPKSVFHC 359          
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.113e-32
Identity = 79/180 (43.89%), Postives = 106/180 (58.89%), Query Frame = 1
Query:   10 PVYTLEMCMTWFGQKEGICLLQN**KPQWPL---MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTF--MLDLKGYSCGEKIYEELGNNGSLIYYSFSRTD----CSTSPRSILKC 522
            P+ TLEMCMT   + +     +            MT+ SGI  I+P+ E+CDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E  G D   +    +++RVL CF P+EFSVA+ +   G  H  T+   LD + Y C   + +EL   G LIY SF+  +     + SPRS+  C
Sbjct:  176 PMVTLEMCMTGLDKTKASVFFKTHADGHVSCAKEMTKLSGISDIIPEMEVCDFDFEPCGYSMNAINGSAFSTIHVTPEDGFSYASYEVQGMDASALAYGDIVKRVLRCFGPSEFSVAV-TIFGGRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHC 354          
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 51/158 (32.28%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   25 EMCMTWFGQKEGICLLQN**KPQWPLMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGD---TFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTD 489
            E  M  F ++EG+              T +SGI  +LP S I DF+FDPCGYSMN +  +   TIH+TPE   SY SF+    +  +     LL +VL  FKP  F+ AL+++  G   GD    F +++  Y+   K          ++  ++ + D
Sbjct:  211 ETVMKQFFKREGVSAWDT---------TVNSGIADLLPGSMIDDFQFDPCGYSMNGLLNEFYWTIHITPESHCSYVSFDT---NVALADYNQLLAKVLNVFKPGRFTAALYAE-DGAPCGDPYTAFDVNVPSYAIQNKTVHGFDGGYDVVVSNYQQLD 355          
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  106 TEDSGIRKILPKSEICDFEFDPCGYSMNSI-EGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 363
            T  SGI  ILP   I DF FDPCGYSMN I +     TIH+TPE+ FSY SFE    +  +     L+ +V+  FKP +F V + ++
Sbjct:  212 TVKSGIDTILPTMHIDDFLFDPCGYSMNGINDKGEYMTIHITPENQFSYVSFET---NVALSNYRKLINQVINTFKPGKFIVTIFAN 295          
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  103 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 354
            +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  203 VTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  103 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 354
            +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  203 VTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
The following BLAST results are available for this feature:
BLAST of BQ623776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
DCAM_ORYSJ2.948e-3445.56S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI8.578e-3445.56S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_MAIZE1.911e-3344.38S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_HORCH2.113e-3243.89S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_DICDI9.860e-1432.28S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_DROME1.574e-1144.83S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_HUMAN7.813e-1142.35S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_BOVIN7.813e-1142.35S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00867 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00867 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623776 ID=BQ623776; Name=BQ623776; organism=Citrus sinensis; type=EST; length=673bp
CATGTAAACCCAGTTTACACTCTAGAGATGTGCATGACCTGGTTTGGACA
GAAAGAGGGCATCTGTCTTCTACAAAACTAATGAAAGCCTCAGTGGCCTC
TGATGACCGAGGACTCTGGCATCAGAAAGATTCTTCCAAAATCTGAGATT
TGTGATTTTGAGTTTGACCCTTGTGGTTACTCCATGAATAGTATTGAAGG
GGATGCAGTATCTACTATCCACGTCACACCTGAAGATGGTTTCAGTTATG
CAAGTTTTGAGGCTGTGGGTTATGATTTTGAGGTTGTGAAGTTGACTCCC
TTGCTTGAGAGGGTGCTTGCTTGCTTCAAACCCGCTGAGTTTTCTGTTGC
TCTGCATTCTGACATTGTTGGCGATGAACATGGAGACACCTTCATGCTGG
ACTTGAAGGGATATTCTTGTGGAGAAAAGATATATGAAGAGCTCGGTAAT
AATGGTTCGCTGATCTACTACAGCTTTTCGAGGACTGATTGCTCCACATC
TCCTAGGTCAATCTTGAAATGCTGTTGGAGCGAGGACGAGAAGGACGAGG
AAGTTGAAGGGAAATAGTGTCCCGGATATAATATTGGGTTTGGTTTTTTC
ATTTTAATCCTTCGCTTATATAATAAAATGTGGGGGGGGTATGTAATGGT
AGGGCTTGAGCAGCCTTACCTTT
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