BQ623780

Overview
NameBQ623780
Unique NameBQ623780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: GUC2C_CAVPO (Heat-stable enterotoxin receptor OS=Cavia porcellus GN=GUCY2C PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 39/130 (30.00%), Postives = 68/130 (52.31%), Query Frame = 3
Query:   24 VYEYMNHGSLDRIL-----FGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGR 398
            V EY   GSL  +L     + +G ++ W+ +  +    A+G++YLHS   +  +H  +K  N ++      KI+DFG + +L P++            + APE L  ++ S+K DVYSFG++  E++  R
Sbjct:  563 VIEYCERGSLREVLNETISYPDGTIMGWEFKISVLYDIAKGMSYLHSSKIE--VHGRLKSTNCVVDSRMVVKITDFGYNSILPPKKDL----------WTAPEHLRQASTSQKGDVYSFGIIAQEIIMRR 680          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: FYN_RAT (Proto-oncogene tyrosine-protein kinase Fyn OS=Rattus norvegicus GN=Fyn PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 3
Query:   21 LVYEYMNHGSL-DRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTR---GYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRR 401
            +V EYMN GSL D +  G G  L+     D+A   A G+AY+        IH D++  NIL+      KI+DFGL++L+   + + +T  +G +    + APE       + K+DV+SFG++L ELV+  R
Sbjct:  340 IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGNGLICKIADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 464          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: FYN_PIG (Proto-oncogene tyrosine-protein kinase Fyn OS=Sus scrofa GN=FYN PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 3
Query:   21 LVYEYMNHGSL-DRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTR---GYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRR 401
            +V EYMN GSL D +  G G  L+     D+A   A G+AY+        IH D++  NIL+      KI+DFGL++L+   + + +T  +G +    + APE       + K+DV+SFG++L ELV+  R
Sbjct:  340 IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGNGLICKIADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 464          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: FYN_HUMAN (Proto-oncogene tyrosine-protein kinase Fyn OS=Homo sapiens GN=FYN PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 3
Query:   21 LVYEYMNHGSL-DRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTR---GYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRR 401
            +V EYMN GSL D +  G G  L+     D+A   A G+AY+        IH D++  NIL+      KI+DFGL++L+   + + +T  +G +    + APE       + K+DV+SFG++L ELV+  R
Sbjct:  340 IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGNGLICKIADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 464          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: FYN_BOVIN (Proto-oncogene tyrosine-protein kinase Fyn OS=Bos taurus GN=FYN PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 3
Query:   21 LVYEYMNHGSL-DRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTR---GYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRR 401
            +V EYMN GSL D +  G G  L+     D+A   A G+AY+        IH D++  NIL+      KI+DFGL++L+   + + +T  +G +    + APE       + K+DV+SFG++L ELV+  R
Sbjct:  340 IVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGNGLICKIADFGLARLI---EDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 464          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: FRK_MOUSE (Tyrosine-protein kinase FRK OS=Mus musculus GN=Frk PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 40/128 (31.25%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   21 LVYEYMNHGSLDRILFGNG-PVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTR---GYLAPEWLTNSAISEKTDVYSFGMVLLELVS 392
            ++ E M HGSL   L  +G   +   ++ D+A   A G+AYL S   Q  IH D+   N+L+  H   K++DFGL+++   +   ++ +    +    + APE +  +  S K+DV+SFG++L E+++
Sbjct:  311 IITELMRHGSLQEYLQNDGGSKIHLIQQVDMAAQVASGMAYLES---QNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDIYESKHEIKLPVKWTAPEAIRTNKFSIKSDVWSFGILLYEIIT 435          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: EPHA6_MOUSE (Ephrin type-A receptor 6 OS=Mus musculus GN=Epha6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 3
Query:    6 GRQRLLVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRG--TRGYLAPEWLTNSAISEKTDVYSFGMVLLELVS 392
            GR  ++V EYM +GSLD  L  +       +   +  G A G+ YL    +   +H D+   NIL++ +   K+SDFGLS++L  +  + +TT  G     + APE +     S  +D +S+G+V+ E++S
Sbjct:  743 GRPVMIVVEYMENGSLDSFLRKHDGHFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTTGGKIPIRWTAPEAIAYRKFSSASDAWSYGIVMWEVMS 870          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: EPHA6_HUMAN (Ephrin type-A receptor 6 OS=Homo sapiens GN=EPHA6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 42/131 (32.06%), Postives = 70/131 (53.44%), Query Frame = 3
Query:    6 GRQRLLVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRG--TRGYLAPEWLTNSAISEKTDVYSFGMVLLELVS 392
            GR  ++V EYM +GSLD  L  +       +   +  G A G+ YL    +   +H D+   NIL++ +   K+SDFGLS++L  +  + +TT  G     + APE +     S  +D +S+G+V+ E++S
Sbjct:  743 GRPVMIVVEYMENGSLDSFLRKHDGHFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTTGGKIPIRWTAPEAIAYRKFSSASDAWSYGIVMWEVMS 870          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: EPA4A_DANRE (Ephrin type-A receptor 4a (Fragment) OS=Danio rerio GN=epha4a PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 3
Query:   18 LLVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTRGY-----------LAPEWLTNSAISEKTDVYSFGMVLLELVS 392
            +++ EYM +GSLD  L  N       +   I  G A G+ YL    +   +H D+   NIL++ +   K+SDFG+S++L  +  + +TT   T  Y            APE +T    +  +DV+S+G+V+ E++S
Sbjct:   70 MIITEYMENGSLDAFLRKNDGRFTVIQLVGILRGIASGMKYLS---DMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEEDPDAAYTTREITGTYQSQGGKIPIRWTAPEAITYRKFTSASDVWSYGIVMWEVMS 202          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: STE20_DEBHA (Serine/threonine-protein kinase STE20 OS=Debaryomyces hansenii GN=STE20 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   21 LVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSG 395
            +V EYM  GSL  I+  +  V+   +   +   T +GL +LHS   + +IH DIK +NILL+     K++DFG    +  E +   TTM GT  ++APE ++      K DV+S G++++E++ G
Sbjct:  874 VVMEYMEGGSLTEIVTHS--VMTEGQIGAVCRETLKGLRFLHS---KGVIHRDIKSDNILLNIDGNIKMTDFGFCAQIN-EINLKRTTMVGTPYWMAPEVVSRKEYGPKVDVWSLGIMIIEMIEG 992          
The following BLAST results are available for this feature:
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
GUC2C_CAVPO3.787e-1130.00Heat-stable enterotoxin receptor OS=Cavia porcellu... [more]
FYN_RAT3.787e-1135.88Proto-oncogene tyrosine-protein kinase Fyn OS=Ratt... [more]
FYN_PIG3.787e-1135.88Proto-oncogene tyrosine-protein kinase Fyn OS=Sus ... [more]
FYN_HUMAN3.787e-1135.88Proto-oncogene tyrosine-protein kinase Fyn OS=Homo... [more]
FYN_BOVIN3.787e-1135.88Proto-oncogene tyrosine-protein kinase Fyn OS=Bos ... [more]
FRK_MOUSE3.787e-1131.25Tyrosine-protein kinase FRK OS=Mus musculus GN=Frk... [more]
EPHA6_MOUSE3.787e-1132.06Ephrin type-A receptor 6 OS=Mus musculus GN=Epha6 ... [more]
EPHA6_HUMAN3.787e-1132.06Ephrin type-A receptor 6 OS=Homo sapiens GN=EPHA6 ... [more]
EPA4A_DANRE3.787e-1130.88Ephrin type-A receptor 4a (Fragment) OS=Danio reri... [more]
STE20_DEBHA4.945e-1135.20Serine/threonine-protein kinase STE20 OS=Debaryomy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00871 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00871 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623780 ID=BQ623780; Name=BQ623780; organism=Citrus sinensis; type=EST; length=610bp
CTCAAGGGAGACAACGCCTACTGGTATATGAGTATATGAATCACGGCTCA
CTGGACCGTATCCTCTTTGGAAATGGTCCTGTCTTGGAATGGCAAGAGAG
GTTTGATATAGCACTGGGAACTGCTCGGGGGCTTGCATATTTGCACAGTG
GTTGTGAACAAAAGATCATTCATTGTGATATCAAACCAGAAAACATTCTC
TTGCACTATCATTTTCAGGCAAAGATATCTGATTTTGGGCTCTCAAAGCT
TCTAACTCCTGAGCAGTCTAGTCTGTTCACAACAATGAGAGGCACTCGTG
GCTACCTTGCACCTGAATGGCTTACAAACTCTGCAATATCAGAAAAAACT
GATGTTTATAGTTTTGGAATGGTACTGCTTGAACTTGTGAGTGGGAGGAG
AAATTGCTCACCACGATCACAAAGTCATAGCATGGATAGTAATAGTAGTG
GGGTTCCCTCTTCATCGTCGTCAGCCTCAGCACTTGTTTATTTTCCACTA
TTGGCATTGGAAATGCACGAGCAAGGAAAGTACTTGGAGCTGGCTGACCC
AAGATTAGAAGGCAGAGTTACAAATGAGGAGGTGGAAAAATTAGTGTGTA
TTGCTTTGTG
back to top