BQ623780

Overview
NameBQ623780
Unique NameBQ623780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: IKKB_RAT (Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Rattus norvegicus GN=Ikbkb PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 54/140 (38.57%), Postives = 67/140 (47.86%), Query Frame = 3
Query:   18 LLVYEYMNHGSLDRIL--FGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQA---KISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRRNCSPRSQ 422
            LL  EY   G L R L  F N   L       +    A  L YLH   E +IIH D+KPENI+L    +    KI D G +K L  +Q SL T+  GT  YLAPE L     +   D +SFG +  E ++G R   P  Q
Sbjct:   93 LLAMEYCQGGDLRRYLNQFENCCGLREGAILTLLSDIASALRYLH---ENRIIHRDLKPENIVLQQGEKRLIHKIIDLGYAKEL--DQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQ 227          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: IKKB_MOUSE (Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Mus musculus GN=Ikbkb PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 54/140 (38.57%), Postives = 67/140 (47.86%), Query Frame = 3
Query:   18 LLVYEYMNHGSLDRIL--FGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQA---KISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRRNCSPRSQ 422
            LL  EY   G L R L  F N   L       +    A  L YLH   E +IIH D+KPENI+L    +    KI D G +K L  +Q SL T+  GT  YLAPE L     +   D +SFG +  E ++G R   P  Q
Sbjct:   93 LLAMEYCQGGDLRRYLNQFENCCGLREGAVLTLLSDIASALRYLH---ENRIIHRDLKPENIVLQQGEKRLIHKIIDLGYAKEL--DQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQ 227          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: IKKA_HUMAN (Inhibitor of nuclear factor kappa-B kinase subunit alpha OS=Homo sapiens GN=CHUK PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 50/135 (37.04%), Postives = 69/135 (51.11%), Query Frame = 3
Query:   18 LLVYEYMNHGSLDRILFGNGPV----LEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHY---HFQAKISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGRR 401
            LL  EY + G L ++L  N P     L+  +   +      G+ YLH   E KIIH D+KPENI+L         KI D G +K +  +Q SL T+  GT  YLAPE   N   +   D +SFG ++ E ++G R
Sbjct:   92 LLAMEYCSGGDLRKLL--NKPENCCGLKESQILSLLSDIGSGIRYLH---ENKIIHRDLKPENIVLQDVGGKIIHKIIDLGYAKDV--DQGSLCTSFVGTLQYLAPELFENKPYTATVDYWSFGTMVFECIAGYR 219          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: GPRK2_DROME (G protein-coupled receptor kinase 2 OS=Drosophila melanogaster GN=Gprk2 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 46/128 (35.94%), Postives = 66/128 (51.56%), Query Frame = 3
Query:   21 LVYEYMNHGSLDRILFGNG--PVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELVSGR 398
            LV   MN G L   ++  G  P  E +     A   A GL +LH   +Q I++ D KPENILL  H   +ISD GL+  +   +  +     GT GY+APE + N   +   D +SFG +L E++ G+
Sbjct:  384 LVLTIMNGGDLKFHIYNMGGEPGFELERARFYAAEVACGLQHLH---KQGIVYRDCKPENILLDDHGHVRISDLGLAVEIP--EGEMVRGRVGTVGYMAPEVIDNEKYAFSPDWFSFGCLLYEMIEGQ 506          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: EPHA8_RAT (Ephrin type-A receptor 8 (Fragment) OS=Rattus norvegicus GN=Epha8 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 3
Query:    3 QGRQRLLVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRG--TRGYLAPEWLTNSAISEKTDVYSFGMVLLELVS 392
            +GR  ++V EYM +GSLD  L  +       +   +  G   G+ YL    +   IH D+   NIL+      K+SDFGLS+ L  +  + +TT  G     + APE +     S  +DV+SFG+V+ E+++
Sbjct:   72 RGRLAMIVTEYMENGSLDAFLRTHDGQFTILQLVGMLKGVGAGMRYLS---DLGYIHRDLAARNILVDGRLVCKVSDFGLSRALEDDPEAAYTTAGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA 200          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: EPHA7_CHICK (Ephrin type-A receptor 7 OS=Gallus gallus GN=EPHA7 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 39/132 (29.55%), Postives = 73/132 (55.30%), Query Frame = 3
Query:    3 QGRQRLLVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRG--TRGYLAPEWLTNSAISEKTDVYSFGMVLLELVS 392
            +G+  ++V EYM +G+LD  L  +       +   +  G A G+ YL    +   +H D+   NIL++ +   K+SDFGLS+++  +  +++TT  G     + APE +     +  +DV+S+G+V+ E++S
Sbjct:  698 RGKPVMIVIEYMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYL---ADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 826          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: DST3_DICDI (Serine/threonine-protein kinase dst3 OS=Dictyostelium discoideum GN=dst3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 3
Query:   18 LLVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLEL 386
            L+V EY   GSL  I+   G  L  +E   +  G  +GL YLHS   ++  H DIK  N+LL      K++DFG+S +   EQ     T+ G+  ++APE +      +K D++S G+  +E+
Sbjct:  104 LIVMEYCKGGSLLDIIELCGKRLIEEEIAAVCAGVVKGLVYLHS---KRTTHRDIKAGNVLLDEEGLPKLADFGVSTI--AEQGQKMNTVIGSPYWMAPEIIMGQGYDQKADIWSLGITAIEI 221          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: CDK20_HUMAN (Cell division protein kinase 20 OS=Homo sapiens GN=CDK20 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 39/127 (30.71%), Postives = 72/127 (56.69%), Query Frame = 3
Query:   18 LLVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHSGCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMRGTRGYLAPEWLTNS-AISEKTDVYSFGMVLLELVSG 395
            +L +E+M     + +     P+ + Q +  + +   +G+A+ H+     I+H D+KP N+L+    Q KI+DFGL+++ +P+ S L+T    TR Y APE L  +    +  D++S G ++ EL++G
Sbjct:   78 VLAFEFMLSDLAEVVRHAQRPLAQAQVKSYLQM-LLKGVAFCHAN---NIVHRDLKPANLLISASGQLKIADFGLARVFSPDGSRLYTHQVATRWYRAPELLYGARQYDQGVDLWSVGCIMGELLNG 200          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: AVR2A_SHEEP (Activin receptor type-2A OS=Ovis aries GN=ACVR2A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   21 LVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHS-------GCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMR-GTRGYLAPEWLTNSAISE-----KTDVYSFGMVLLELVS 392
            L+  +   GSL   L  N  V+ W E   IA   ARGLAYLH        G +  I H DIK +N+LL  +  A I+DFGL+      +S+  T  + GTR Y+APE L  +   +     + D+Y+ G+VL EL S
Sbjct:  265 LITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 399          
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: AVR2A_MOUSE (Activin receptor type-2A OS=Mus musculus GN=Acvr2a PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   21 LVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHS-------GCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMR-GTRGYLAPEWLTNSAISE-----KTDVYSFGMVLLELVS 392
            L+  +   GSL   L  N  V+ W E   IA   ARGLAYLH        G +  I H DIK +N+LL  +  A I+DFGL+      +S+  T  + GTR Y+APE L  +   +     + D+Y+ G+VL EL S
Sbjct:  265 LITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 399          
The following BLAST results are available for this feature:
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
IKKB_RAT8.435e-1138.57Inhibitor of nuclear factor kappa-B kinase subunit... [more]
IKKB_MOUSE8.435e-1138.57Inhibitor of nuclear factor kappa-B kinase subunit... [more]
IKKA_HUMAN8.435e-1137.04Inhibitor of nuclear factor kappa-B kinase subunit... [more]
GPRK2_DROME8.435e-1135.94G protein-coupled receptor kinase 2 OS=Drosophila ... [more]
EPHA8_RAT8.435e-1132.58Ephrin type-A receptor 8 (Fragment) OS=Rattus norv... [more]
EPHA7_CHICK8.435e-1129.55Ephrin type-A receptor 7 OS=Gallus gallus GN=EPHA7... [more]
DST3_DICDI8.435e-1134.15Serine/threonine-protein kinase dst3 OS=Dictyostel... [more]
CDK20_HUMAN8.435e-1130.71Cell division protein kinase 20 OS=Homo sapiens GN... [more]
AVR2A_SHEEP8.435e-1137.96Activin receptor type-2A OS=Ovis aries GN=ACVR2A P... [more]
AVR2A_MOUSE8.435e-1137.96Activin receptor type-2A OS=Mus musculus GN=Acvr2a... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00871 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00871 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623780 ID=BQ623780; Name=BQ623780; organism=Citrus sinensis; type=EST; length=610bp
CTCAAGGGAGACAACGCCTACTGGTATATGAGTATATGAATCACGGCTCA
CTGGACCGTATCCTCTTTGGAAATGGTCCTGTCTTGGAATGGCAAGAGAG
GTTTGATATAGCACTGGGAACTGCTCGGGGGCTTGCATATTTGCACAGTG
GTTGTGAACAAAAGATCATTCATTGTGATATCAAACCAGAAAACATTCTC
TTGCACTATCATTTTCAGGCAAAGATATCTGATTTTGGGCTCTCAAAGCT
TCTAACTCCTGAGCAGTCTAGTCTGTTCACAACAATGAGAGGCACTCGTG
GCTACCTTGCACCTGAATGGCTTACAAACTCTGCAATATCAGAAAAAACT
GATGTTTATAGTTTTGGAATGGTACTGCTTGAACTTGTGAGTGGGAGGAG
AAATTGCTCACCACGATCACAAAGTCATAGCATGGATAGTAATAGTAGTG
GGGTTCCCTCTTCATCGTCGTCAGCCTCAGCACTTGTTTATTTTCCACTA
TTGGCATTGGAAATGCACGAGCAAGGAAAGTACTTGGAGCTGGCTGACCC
AAGATTAGAAGGCAGAGTTACAAATGAGGAGGTGGAAAAATTAGTGTGTA
TTGCTTTGTG
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