BQ623780

Overview
NameBQ623780
Unique NameBQ623780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: AVR2A_HUMAN (Activin receptor type-2A OS=Homo sapiens GN=ACVR2A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:   21 LVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHS-------GCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMR-GTRGYLAPEWLTNSAISE-----KTDVYSFGMVLLELVS 392
            L+  +   GSL   L  N  V+ W E   IA   ARGLAYLH        G +  I H DIK +N+LL  +  A I+DFGL+      +S+  T  + GTR Y+APE L  +   +     + D+Y+ G+VL EL S
Sbjct:  265 LITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 399
[Close]
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: AVR2A_CHICK (Activin receptor type-2A OS=Gallus gallus GN=ACVR2A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:   21 LVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHS-------GCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMR-GTRGYLAPEWLTNSAISE-----KTDVYSFGMVLLELVS 392
            L+  +   GSL   L  N  V+ W E   IA   ARGLAYLH        G +  I H DIK +N+LL  +  A I+DFGL+      +S+  T  + GTR Y+APE L  +   +     + D+Y+ G+VL EL S
Sbjct:  265 LITAFHEKGSLTDFLKAN--VVSWNELCHIAQTMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 399
[Close]
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Match: AVR2A_BOVIN (Activin receptor type-2A OS=Bos taurus GN=ACVR2A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 3 
Query:   21 LVYEYMNHGSLDRILFGNGPVLEWQERFDIALGTARGLAYLHS-------GCEQKIIHCDIKPENILLHYHFQAKISDFGLSKLLTPEQSSLFTTMR-GTRGYLAPEWLTNSAISE-----KTDVYSFGMVLLELVS 392
            L+  +   GSL   L  N  V+ W E   IA   ARGLAYLH        G +  I H DIK +N+LL  +  A I+DFGL+      +S+  T  + GTR Y+APE L  +   +     + D+Y+ G+VL EL S
Sbjct:  265 LITAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 399
The following BLAST results are available for this feature:
BLAST of BQ623780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
AVR2A_HUMAN8.435e-1137.96Activin receptor type-2A OS=Homo sapiens GN=ACVR2A... [more]
AVR2A_CHICK8.435e-1137.96Activin receptor type-2A OS=Gallus gallus GN=ACVR2... [more]
AVR2A_BOVIN8.435e-1137.96Activin receptor type-2A OS=Bos taurus GN=ACVR2A P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00871 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00871 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623780 ID=BQ623780; Name=BQ623780; organism=Citrus sinensis; type=EST; length=610bp
CTCAAGGGAGACAACGCCTACTGGTATATGAGTATATGAATCACGGCTCA
CTGGACCGTATCCTCTTTGGAAATGGTCCTGTCTTGGAATGGCAAGAGAG
GTTTGATATAGCACTGGGAACTGCTCGGGGGCTTGCATATTTGCACAGTG
GTTGTGAACAAAAGATCATTCATTGTGATATCAAACCAGAAAACATTCTC
TTGCACTATCATTTTCAGGCAAAGATATCTGATTTTGGGCTCTCAAAGCT
TCTAACTCCTGAGCAGTCTAGTCTGTTCACAACAATGAGAGGCACTCGTG
GCTACCTTGCACCTGAATGGCTTACAAACTCTGCAATATCAGAAAAAACT
GATGTTTATAGTTTTGGAATGGTACTGCTTGAACTTGTGAGTGGGAGGAG
AAATTGCTCACCACGATCACAAAGTCATAGCATGGATAGTAATAGTAGTG
GGGTTCCCTCTTCATCGTCGTCAGCCTCAGCACTTGTTTATTTTCCACTA
TTGGCATTGGAAATGCACGAGCAAGGAAAGTACTTGGAGCTGGCTGACCC
AAGATTAGAAGGCAGAGTTACAAATGAGGAGGTGGAAAAATTAGTGTGTA
TTGCTTTGTG
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