BQ623783

Overview
NameBQ623783
Unique NameBQ623783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623783_ssr56 microsatellite BQ623783_ssr56:56..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10809 contig Csv1_Contig10809:468..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.464e-33
Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            +Y++LS AL KMF +FT          + MNE      +NGSD V TYEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRA +K KN+S
Sbjct:  154 SYKDLSLALQKMFGTFTATG-------NNMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          

HSP 2 Score: 44.669 bits (104), Expect = 5.464e-33
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 2
Query:    5 KNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            +NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDL+
Sbjct:   98 RNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLK 150          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.464e-33
Identity = 62/96 (64.58%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            +Y++LS AL KMF +FT          + MNE      +NGSD V TYEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGLAPRA +K KN+S
Sbjct:  154 SYKDLSLALQKMFGTFTATG-------NNMNE------VNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          

HSP 2 Score: 44.669 bits (104), Expect = 5.464e-33
Identity = 28/53 (52.83%), Postives = 32/53 (60.38%), Query Frame = 2
Query:    5 KNIMAVQ----KDNEEGDNK-----AXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            +NIM VQ    K  EE D +     A      + AFVKVSMDGAPYLRKVDL+
Sbjct:   98 RNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLK 150          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.864e-31
Identity = 60/97 (61.86%), Postives = 72/97 (74.23%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            K Y++LS AL KMF  FT G       KD ++ES+        +YV TYEDKDGDWMLVGDVPW+MF +SC+RLRIMKGS+AIGLAPRAV+K KNR+
Sbjct:  173 KNYKDLSTALEKMFIGFTTG-------KDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257          

HSP 2 Score: 37.3502 bits (85), Expect = 4.864e-31
Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN MA  +     ++ A         +VKVSMDGAPYLRKVDL+
Sbjct:  128 KNTMATNQLKSSKED-AEAKQGQGFLYVKVSMDGAPYLRKVDLK 170          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.159e-30
Identity = 64/101 (63.37%), Postives = 84/101 (83.17%), Query Frame = 1
Query:  136 SYTKAYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 432
            +YT +YQ+LS AL KMFS FT+G CG  G   ++ M+E KL DLL+GS++V TYEDKDGDWMLVGDVPW++F ++C++L+IMKGS++IGLAP AVEK KN+
Sbjct:  219 TYT-SYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.398e-30
Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS 435
            K Y+++S  L KMF  F+ G  G++  KD              +YV TYEDKDGDWMLVGDVPW+MF DSC+RLRIMKGS+AIGLAPRA EK KNR+
Sbjct:  180 KNYKDMSLGLEKMFIGFSTGKEGAENQKD-------------GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNRN 263          

HSP 2 Score: 38.5058 bits (88), Expect = 1.398e-30
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 2
Query:    5 KNIMA---VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLEAIQKPTKNSL 166
            KN MA   ++ + E+ D K          +VKVSMDGAPYLRKVDL+  +     SL
Sbjct:  135 KNTMATNQIKSNKEDVDAKQGQ----GFLYVKVSMDGAPYLRKVDLKTYKNYKDMSL 187          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.247e-28
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  145 KAYQELSDAL-GKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA 411
            + Y +L  AL  K FS FTI   G++       E KL+D ++G++YVPTYEDKDGDWMLVGDVPW MFV++C+RLR+MK SEA+ LAPR+
Sbjct:  129 RGYDQLLAALQDKFFSHFTIRKLGNE-------EMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          

HSP 2 Score: 38.5058 bits (88), Expect = 1.247e-28
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 2
Query:   83 FVKVSMDGAPYLRKVDLEA 139
            FVKV++DGAPYLRKVDLEA
Sbjct:  109 FVKVAVDGAPYLRKVDLEA 127          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.626e-28
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  151 YQELSDAL-GKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVE 417
            Y +L  AL  K FS FTI            +E KL+D +NG++YVPTYEDKDGDWMLVGDVPW MFV++C+RLR+MK SEA+ LAPRA +
Sbjct:  117 YDQLLRALQDKFFSHFTIRKFAD-------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          

HSP 2 Score: 38.5058 bits (88), Expect = 1.626e-28
Identity = 17/19 (89.47%), Postives = 19/19 (100.00%), Query Frame = 2
Query:   83 FVKVSMDGAPYLRKVDLEA 139
            FVKV++DGAPYLRKVDLEA
Sbjct:   95 FVKVAVDGAPYLRKVDLEA 113          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.333e-27
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCGSQ--GMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK 420
            +Y++LS AL KMFS F  G   S     +D + +    D L   +YV TYEDKD DWMLVGD+PWD+F  SC++LRIM+GS+A G+APR++E+
Sbjct:  184 SYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276          

HSP 2 Score: 39.2762 bits (90), Expect = 1.333e-27
Identity = 20/44 (45.45%), Postives = 27/44 (61.36%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN +A      +G+++          +VKVSMDGAPYLRKVDL+
Sbjct:  139 KNTLAASATKTKGEDQGKSEV--GCCYVKVSMDGAPYLRKVDLK 180          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.986e-27
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCG--SQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK 420
            +Y++LS AL KMFS F  G  G      +D +      D L   +YV TYEDKD DWMLVGD+PWD+F   C++L+IM+GS+A G+APR++E+
Sbjct:  175 SYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 267          

HSP 2 Score: 40.0466 bits (92), Expect = 4.986e-27
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN +A      +G++K          +VKVSMDGAPYLRKVDL+
Sbjct:  130 KNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLK 171          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.987e-27
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCG--SQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK 420
            +Y++LS AL KMFS F  G  G      +D +      D L   +YV TYEDKD DWMLVGD+PWD+F   C++L+IM+GS+A G+APR++E+
Sbjct:  174 SYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 266          

HSP 2 Score: 40.0466 bits (92), Expect = 4.987e-27
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 2
Query:    5 KNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            KN +A      +G++K          +VKVSMDGAPYLRKVDL+
Sbjct:  129 KNTLAASASKGKGEDKGTAEGGP--LYVKVSMDGAPYLRKVDLK 170          
The following BLAST results are available for this feature:
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
IAA13_ORYSJ5.464e-3364.58Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI5.464e-3364.58Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA17_ORYSJ4.864e-3161.86Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA8_ARATH1.159e-3063.37Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA3_ORYSJ1.398e-3058.76Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA15_ORYSJ1.247e-2857.78Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA1_ORYSJ1.626e-2858.89Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA19_ORYSJ1.333e-2751.61Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA5_ORYSI4.986e-2749.46Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSJ4.987e-2749.46Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00874 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00874 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623783 ID=BQ623783; Name=BQ623783; organism=Citrus sinensis; type=EST; length=672bp
GGGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAGGTGATAATA
AGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAAGTGAGCATG
GATGGTGCCCCATACTTGCGCAAGGTTGACCTTGAAGCTATACAAAAGCC
TACCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTTTCACCAT
TGGTAACTGTGGGTCTCAAGGGATGAAGGATTTTATGAATGAGAGCAAAC
TGATTGATCTTTTGAATGGCTCAGATTATGTACCTACTTATGAAGACAAA
GATGGAGATTGGATGCTTGTTGGTGATGTACCATGGGATATGTTTGTTGA
TTCATGCAAACGCTTAAGAATAATGAAAGGATCCGAGGCCATTGGACTTG
CACCAAGGGCAGTTGAGAAGTGCAAGAACAGAAGCTGAAGATTGATTATG
ATCAGCAACTTTTTGCCAAAAGCAGCTTGTTAAAAAAGCTGATTTCAAAA
CCAAAAGGGCAAACCGGCTTGTTGAGGAATCAAGCAGGGAGAGTTTGGAT
GTGCTTATGTATCATGCGGTTTTTTTTTTCTTTTCTCTTTTTTGGGGTTT
TGGTTTTAAAATGTTAGTAATTAGTAGAGAGTTGGAATATATTCTGAGAG
AGATTTGTTTAGTGACCAGAAG
back to top