BQ623783

Overview
NameBQ623783
Unique NameBQ623783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623783_ssr56 microsatellite BQ623783_ssr56:56..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10809 contig Csv1_Contig10809:468..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: AUX22_SOYBN (Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.825e-21
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA--IGLAPR 408
            K Y +L+ AL K+F        G  GM + +  +      + S++VP YEDKDGDWMLVGDVPW+MF++SCKRLRIMK S+A   GL P+
Sbjct:  108 KGYSDLALALDKLF--------GCYGMVEALKNA------DNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSDAKGFGLQPK 183          

HSP 2 Score: 34.6538 bits (78), Expect = 9.825e-21
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 2
Query:   83 FVKVSMDGAPYLRKVDL 133
            +VKVSMDGAP+LRK+DL
Sbjct:   88 YVKVSMDGAPFLRKIDL 104          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA6_PEA (Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.167e-20
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCG-SQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIG 396
            K Y EL+ AL K+F       CG  + +KD  N           ++VP YEDKDGDWMLVGDVPW+MF++SCKRLRIMK S+A G
Sbjct:   97 KGYLELALALEKLFDC-----CGIEEALKDAEN----------CEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKG 166          

HSP 2 Score: 35.039 bits (79), Expect = 2.167e-20
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 2
Query:   83 FVKVSMDGAPYLRKVDL 133
            ++KVSMDGAPYLRK+DL
Sbjct:   77 YMKVSMDGAPYLRKIDL 93          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: AX22C_PHAAU (Auxin-induced protein 22C OS=Phaseolus aureus GN=AUX22C PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.196e-20
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIG 396
            K Y +L+ AL K F  + I     + +KD  N          +++VP YEDKDGDWMLVGDVPW+MF +SCKRLRIMK S+A G
Sbjct:  101 KGYSDLAFALDKFFGCYGI----CEALKDAEN----------AEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKG 170          

HSP 2 Score: 34.6538 bits (78), Expect = 6.196e-20
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 2
Query:   83 FVKVSMDGAPYLRKVDL 133
            +VKVSMDGAP+LRK+DL
Sbjct:   81 YVKVSMDGAPFLRKIDL 97          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA19_ARATH (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana GN=IAA19 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.047e-19
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  142 TKAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA--IGLAPRAVEK 420
            ++ Y +L+ AL K+F    IG     G              +  +YV  YEDKDGDWML GDVPW MF++SCKRLRIMK S+A   GL PR V++
Sbjct:  117 SQGYDDLAFALDKLFGFRGIGVALKDG--------------DNCEYVTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGLQPRGVDE 197          

HSP 2 Score: 35.039 bits (79), Expect = 1.047e-19
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 2
Query:   77 VAFVKVSMDGAPYLRKVDLEAIQ 145
            + +VKVSMDG PYLRK+DL + Q
Sbjct:   96 LGYVKVSMDGVPYLRKMDLGSSQ 118          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: AX22A_PHAAU (Auxin-induced protein 22A OS=Phaseolus aureus GN=AUX22A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.362e-19
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA--IGLAPR 408
            K Y +L+ AL K+F        G  GM + +        +   ++VP YEDKDGDWMLVGDVPW+MF++SCKRLRIMK ++A   GL P+
Sbjct:  107 KGYSDLAFALEKLF--------GCYGMVEALKN------VENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRADAKGFGLQPK 182          

HSP 2 Score: 33.8834 bits (76), Expect = 1.362e-19
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 2
Query:   83 FVKVSMDGAPYLRKVDL 133
            +VKVSMDGAP+LRK+DL
Sbjct:   87 YVKVSMDGAPFLRKMDL 103          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.979e-19
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVE 417
            +Y+ L+  L  MF     G  G      F    +L+D    S++V TYEDK+GDWMLVGDVPW MF++S KRLR+MK SEA GLA R  E
Sbjct:  152 SYENLAQTLEDMFFRTNPGTVGLTSQ--FTKPLRLLD--GSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQE 237          

HSP 2 Score: 31.9574 bits (71), Expect = 2.979e-19
Identity = 17/38 (44.74%), Postives = 20/38 (52.63%), Query Frame = 2
Query:   26 KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLEA 139
            KD+E  D          V F+KV+MDG    RKVDL A
Sbjct:  112 KDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNA 149          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA12_ARATH (Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.557e-19
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  148 AYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGS-DYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRAVEK 420
            +Y+ L+  L +MF   T   C          + K + LL+GS D+V TYEDK+GDWMLVGDVPW MF++S KRLRIM  SEA GLAPR  E+
Sbjct:  147 SYENLAQTLEEMFFGMTGTTC--------REKVKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSEASGLAPRRQEQ 230          

HSP 2 Score: 26.5646 bits (57), Expect = 6.557e-19
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 2
Query:   77 VAFVKVSMDGAPYLRKVDLEA 139
            + FVKV+MDG    RKVD+ A
Sbjct:  124 LGFVKVNMDGVGIGRKVDMRA 144          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.665e-19
Identity = 41/87 (47.13%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  151 YQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGLAPRA 411
            Y EL +AL  MF   TIG               L+D     ++   YED DGDWMLVGDVPW+MFV SCKR+R+M+  EA GL+  A
Sbjct:   69 YLELVEALNDMFYCSTIG---------------LMDGYGEWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140          

HSP 2 Score: 36.1946 bits (82), Expect = 8.665e-19
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2
Query:   83 FVKVSMDGAPYLRKVDLEA 139
            FVKVSMDG PYLRKVD+ A
Sbjct:   47 FVKVSMDGTPYLRKVDVAA 65          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA24_ORYSJ (Auxin-responsive protein IAA24 OS=Oryza sativa subsp. japonica GN=IAA24 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.445e-18
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEA 390
            K Y+EL +AL  +F+      C S    D  ++ +         +   YEDKDGD MLVGDVPW+MF+ SCK+LRIMKGSEA
Sbjct:  151 KGYRELREALDLLFTK-----CFSATASDGCSDGQ---------FAIAYEDKDGDLMLVGDVPWEMFISSCKKLRIMKGSEA 218          

HSP 2 Score: 39.2762 bits (90), Expect = 1.445e-18
Identity = 19/32 (59.38%), Postives = 21/32 (65.62%), Query Frame = 2
Query:   41 GDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLE 136
            GD K          +VKVSMDGAPYLRKVDL+
Sbjct:  117 GDEKQKQQQQGGGLYVKVSMDGAPYLRKVDLK 148          
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Match: IAA12_ORYSJ (Auxin-responsive protein IAA12 OS=Oryza sativa subsp. japonica GN=IAA12 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.130e-18
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  145 KAYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDMFVDSCKRLRIMKGSEAIGL-APRAVE 417
            K Y+EL +AL  MF  F                S   D  N S++  TY+DKDGD MLVGDVP+DMF  +CK+LRIMK SEA GL +PR ++
Sbjct:  150 KGYRELREALEAMFVCF----------------SGAADGANPSEFAITYQDKDGDLMLVGDVPFDMFTSTCKKLRIMKRSEATGLGSPRQMK 225          

HSP 2 Score: 35.4242 bits (80), Expect = 4.130e-18
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 2
Query:   80 AFVKVSMDGAPYLRKVDL 133
            + VKVSMDGAPYLRK+DL
Sbjct:  129 SLVKVSMDGAPYLRKIDL 146          
The following BLAST results are available for this feature:
BLAST of BQ623783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
AUX22_SOYBN9.825e-2150.00Auxin-induced protein AUX22 OS=Glycine max GN=AUX2... [more]
IAA6_PEA2.167e-2052.94Auxin-induced protein IAA6 OS=Pisum sativum GN=IAA... [more]
AX22C_PHAAU6.196e-2051.19Auxin-induced protein 22C OS=Phaseolus aureus GN=A... [more]
IAA19_ARATH1.047e-1946.32Auxin-responsive protein IAA19 OS=Arabidopsis thal... [more]
AX22A_PHAAU1.362e-1947.78Auxin-induced protein 22A OS=Phaseolus aureus GN=A... [more]
IAA13_ARATH2.979e-1950.00Auxin-responsive protein IAA13 OS=Arabidopsis thal... [more]
IAA12_ARATH6.557e-1952.17Auxin-responsive protein IAA12 OS=Arabidopsis thal... [more]
IAA26_ORYSJ8.665e-1947.13Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA24_ORYSJ1.445e-1847.56Auxin-responsive protein IAA24 OS=Oryza sativa sub... [more]
IAA12_ORYSJ4.130e-1847.83Auxin-responsive protein IAA12 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00874 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00874 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623783 ID=BQ623783; Name=BQ623783; organism=Citrus sinensis; type=EST; length=672bp
GGGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAGGTGATAATA
AGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAAGTGAGCATG
GATGGTGCCCCATACTTGCGCAAGGTTGACCTTGAAGCTATACAAAAGCC
TACCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTTTCACCAT
TGGTAACTGTGGGTCTCAAGGGATGAAGGATTTTATGAATGAGAGCAAAC
TGATTGATCTTTTGAATGGCTCAGATTATGTACCTACTTATGAAGACAAA
GATGGAGATTGGATGCTTGTTGGTGATGTACCATGGGATATGTTTGTTGA
TTCATGCAAACGCTTAAGAATAATGAAAGGATCCGAGGCCATTGGACTTG
CACCAAGGGCAGTTGAGAAGTGCAAGAACAGAAGCTGAAGATTGATTATG
ATCAGCAACTTTTTGCCAAAAGCAGCTTGTTAAAAAAGCTGATTTCAAAA
CCAAAAGGGCAAACCGGCTTGTTGAGGAATCAAGCAGGGAGAGTTTGGAT
GTGCTTATGTATCATGCGGTTTTTTTTTTCTTTTCTCTTTTTTGGGGTTT
TGGTTTTAAAATGTTAGTAATTAGTAGAGAGTTGGAATATATTCTGAGAG
AGATTTGTTTAGTGACCAGAAG
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