BQ623787

Overview
NameBQ623787
Unique NameBQ623787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.189e-38
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   36 IKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   36 IKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   36 IKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 77/117 (65.81%), Postives = 90/117 (76.92%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            +R +PL +A+ +L  V  HK+ +PF RF GG+GR AQ K  +   QGRWPVKSA F+LDLLKNAESNAE KGLDVD L I HI V +A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   38 LRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 78/117 (66.67%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   36 IKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.471e-38
Identity = 77/117 (65.81%), Postives = 93/117 (79.49%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            IRK+PL +A  YL++V+ HK+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   36 IRKMPLKRAVAYLKNVIGHKECVPFRRFNGGVGRCAQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            I+ + L KA+ YL +V+ HKQ IPF R  GGVGR AQAKN +   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:   36 IKGMHLHKARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.333e-38
Identity = 78/117 (66.67%), Postives = 92/117 (78.63%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            IRK+PL +A  YL++V A K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+  GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL L+
Sbjct:   36 IRKMPLKRAVAYLKNVTAQKECVPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYSGLDVDRLVVQHIQVNRAACLRRRTYRAHGRINPYMSSPCHIELWLT 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+++ L +A+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct:   36 IKRMSLRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 76/117 (64.96%), Postives = 96/117 (82.05%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+++PL +A+R+L++V+  K+ +PF RF GGVGR AQAK+      GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I+HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   36 IKRMPLRRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
The following BLAST results are available for this feature:
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL17_FELCA4.189e-3866.6760S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT5.471e-3866.6760S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE5.471e-3866.6760S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_CAEEL5.471e-3865.8160S ribosomal protein L17 OS=Caenorhabditis elegan... [more]
RL17_BOVIN5.471e-3866.6760S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]
RL17_AGRLI5.471e-3865.8160S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_PECGU9.333e-3866.3860S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]
RL17_BIPLU9.333e-3866.6760S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]
RL17_ARGMO1.219e-3765.8160S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_ANOGA1.219e-3764.9660S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00878 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00878 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623787 ID=BQ623787; Name=BQ623787; organism=Citrus sinensis; type=EST; length=572bp
CATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAGGATGTTA
TGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGGTGTTGGA
CGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGACGATGGCC
TGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCTGAGAGTA
ATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTCTCACATC
CAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCATGG
AAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCTTAT
CTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCAACT
AGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAGAGT
GCCCTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACCTTT
AATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATTTTGTTTA
TTTCATATTACGTCCCAGTTTA
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