BQ623787

Overview
NameBQ623787
Unique NameBQ623787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:223..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.630e-32
Identity = 68/114 (59.65%), Postives = 85/114 (74.56%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 343
            I+ + +  AKRYL DV+  K+ +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   36 IKGMLVKDAKRYLNDVIDRKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_IGNH4 (50S ribosomal protein L22P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.830e-17
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 343
            IR + LT+AK YLE V+  ++ +P+ R+ G V       ++H    GR+PVK+AK+ L LLKN E+NAE KGL+V+ L I HI  ++    +R   RA GR  P      H+E+
Sbjct:   40 IRGMKLTEAKAYLERVIKMEEPVPYRRYHGKVAHKRGLADKHGIPMGRYPVKAAKYFLKLLKNVEANAEFKGLEVEKLKIVHIASHKGMTIKRWMPRAFGRATPEFERRTHLEV 153          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_METS3 (50S ribosomal protein L22P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.642e-16
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            IR + +TKAK YLEDV+  K+++PF R    VG     K +     GR+PVK+A+ +L +L+NAE+NAE KG+D + L+I HI  ++         RA GR+ P+ +   HI++ L
Sbjct:   38 IRGMEVTKAKNYLEDVIDMKKSVPFKRHNRQVGHR---KGQEGWAAGRYPVKAAEQVLKVLENAEANAEYKGMDTENLFIEHISSHRGVVLPGVIPRAFGRMTPFNTPTTHIQIVL 150          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.507e-16
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ + + +A+++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +L+NAESNAE KGL+   +YI+H  + + +  R    RA GR  P  +   +IE+ LS
Sbjct:   37 IKGMKVPEARKFLEDVIALKQAVPFKRHHDGSGH-----RKGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            IR + L  AK+ LEDV++ K AIP+ R+   V       +R   G GR+PVK+AK  +DLL N E+NAE KG++ D+L I H+  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:   34 IRGMKLDYAKQILEDVVSKKYAIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_METMA (50S ribosomal protein L22P OS=Methanosarcina mazei GN=rpl22p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ +  ++A+++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR +P  +   +IE+ LS
Sbjct:   37 IKGMKASEARKFLEDVIAMKQAVPFKRHSEGAGH-----RKGPMAGGRYPVSASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRASPKDTETVNIEMILS 148          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ +    A++YLEDV+  KQA+PF R    +G       + P   GR+PVK A  +L LLKNAESNAE KGL+ + ++I+H  +N+ +       RA GR +P  +   ++E+ +S
Sbjct:   37 IKGMRTNAARQYLEDVVILKQAVPFGRHNDSLGH-----RKGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMIIS 148          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            IR + L  A RYL+DV+A K+ +P  RF    G     K     G GR+PVK AK +  +L NA++NAE KGLDVD L I H   ++    R    RA GR  P+     HIE+ +
Sbjct:   40 IRGMMLNDALRYLDDVIAKKRPVPMKRFNDSQGH----KPGKGFGPGRYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIVV 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_METAC (50S ribosomal protein L22P OS=Methanosarcina acetivorans GN=rpl22p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ +  ++A+++LEDV+A KQA+PF +   G G       + P   G++P+ ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR  P  +   +IE+ LS
Sbjct:   37 IKGMKASEARKFLEDVIAMKQAVPFKKHHDGSGH-----RKGPMAAGKYPISASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_SULAC (50S ribosomal protein L22P OS=Sulfolobus acidocaldarius GN=rpl22p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.450e-14
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            IR + L +A+ +L +V+  K+A+PF R+  G    +    +     GR+P K+ K++L LL NAE+NA  KGLD+D L I HI  ++    +R   RA GR         HIE+ L
Sbjct:   38 IRGMNLKEAREFLNNVLEEKEALPFWRYSHGTSHRSNISRKWKVKSGRYPKKAIKYVLKLLDNAENNANSKGLDIDNLKIVHIAAHKGLVLKRYMTRAFGRSTRKYKYLSHIEVIL 153          
The following BLAST results are available for this feature:
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL17_THEAN2.630e-3259.6560S ribosomal protein L17 OS=Theileria annulata GN... [more]
RL22_IGNH41.830e-1741.2350S ribosomal protein L22P OS=Ignicoccus hospitali... [more]
RL22_METS32.642e-1640.5250S ribosomal protein L22P OS=Methanobrevibacter s... [more]
RL22_METBF4.507e-1640.1750S ribosomal protein L22P OS=Methanosarcina barke... [more]
RL22_THEVO7.688e-1637.6150S ribosomal protein L22P OS=Thermoplasma volcani... [more]
RL22_METMA7.688e-1640.1750S ribosomal protein L22P OS=Methanosarcina mazei... [more]
RL22_METBU6.508e-1538.4650S ribosomal protein L22P OS=Methanococcoides bur... [more]
RL22_PYRKO1.110e-1441.3850S ribosomal protein L22P OS=Pyrococcus kodakarae... [more]
RL22_METAC1.110e-1437.6150S ribosomal protein L22P OS=Methanosarcina aceti... [more]
RL22_SULAC1.450e-1437.0750S ribosomal protein L22P OS=Sulfolobus acidocald... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00878 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00878 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623787 ID=BQ623787; Name=BQ623787; organism=Citrus sinensis; type=EST; length=572bp
CATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAGGATGTTA
TGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGGTGTTGGA
CGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGACGATGGCC
TGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCTGAGAGTA
ATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTCTCACATC
CAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCATGG
AAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCTTAT
CTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCAACT
AGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAGAGT
GCCCTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACCTTT
AATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATTTTGTTTA
TTTCATATTACGTCCCAGTTTA
back to top