BQ623787

Overview
NameBQ623787
Unique NameBQ623787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:223..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_ARCFU (50S ribosomal protein L22P OS=Archaeoglobus fulgidus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 343
            IR   + +A++ LEDV+  K+AIPF R      + A  +       GR+P K+AK++L +L+N E+NAE KGLDV+ L I H Q  + +   R   RA GR  P       +EL
Sbjct:   40 IRGKKIEEARKLLEDVVEMKRAIPFKRH---KKKVAHRRGLEKWYAGRYPQKAAKYVLKVLRNLEANAEYKGLDVENLVIVHAQAQKGRVIERYMPRAFGRATPRFQQLTTVEL 150          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_METMJ (50S ribosomal protein L22P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 352
            I+ +  T+AK YL DV+A K+AIPF RF   V    +  ++ P   GR+PVK+A+  + LL++ E NAE  GLDV+ L I H   N  +  R    RA GR  P      +IE+ ++
Sbjct:   37 IKNMTTTEAKAYLTDVVALKKAIPFKRFNRNVAHK-RGLSKWP--AGRYPVKAAEAYIRLLESVEKNAEYIGLDVENLRIDHAAANTGRGLRAFFPRAMGRATPKRRETVNIEIVVT 150          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            IR + L  AK++L +V+  K+A+PF +   G    +    +     GR+P K+ K++L +L+NAE+NA  KGLD++ + I HI  ++    +R   RA GR         HIE+ L
Sbjct:   38 IRGMKLNDAKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGRYPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVIL 153          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            +R + L  A RYL+DV+A ++ +P  R+    G     K     G GR+PVK AK I  +L NA++NA+ KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   39 LRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVV 150          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            +R + L  A RYL+DV+A K+ +P  R+    G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   39 LRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.157e-12
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            IR + L  AK +L  V+  K+A+PF R+  G    +    +     GR+P K+ + +L +L+NAE+NA  KGLDVD L I HI  ++    +R   RA GR         +IE+ L
Sbjct:   38 IRGMYLNDAKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVIL 153          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_AERPE (50S ribosomal protein L22P OS=Aeropyrum pernix GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 343
            I  + + +A+RYL  V+  ++A+PF R  G         ++     GR+PVK+A+++L LL N E+NA  K LDV+ L I H+  ++    +R   RA GR  P      HIE+
Sbjct:   38 ISGMRVDEARRYLRAVIEKREAVPFRRAHGKQAHRRGLADKWGWPVGRYPVKAARYMLKLLDNVEANAANKNLDVERLKIIHVAAHKGITLKRWMPRAWGRATPRNRVHSHIEI 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_UNCMA (50S ribosomal protein L22P OS=Uncultured methanogenic archaeon RC-I GN=rpl22p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            IR + L+ AK YL+DV+  K+++PF +    VG       RH +G   GR+PVK++  IL LLK+AE+NAE KGL+ + + I H    + +  +    RA GR   +      +E+ +
Sbjct:   37 IRGMKLSAAKTYLQDVIDKKRSVPFKQHARNVGH-----KRHQSGWPSGRYPVKASTEILKLLKHAEANAEYKGLETENMRIIHSTSKKGRVIQGIMPRAMGRATAWNIELVTVEVVI 149          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_METS5 (50S ribosomal protein L22P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 37/114 (32.46%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 343
            IR + + +A+ +L+ VM  K+A+P+ R+  G    +    +     GR+P K+ K++   L+NA +NA+ KGLD D L + HI  ++    +R   RA GR     +   HIE+
Sbjct:   38 IRGMNVKEAQAFLQRVMEEKEALPYWRYDHGASHKSNISRKWKVKSGRYPKKAIKYVNKALENALANAQGKGLDEDKLKVVHIAAHKGIIIKRFMPRAFGRATKKYNRTSHIEV 151          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_PYRCJ (50S ribosomal protein L22P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 343
            I+ + L +AK +LEDV+  K+ IP   F       A      P    +WPVK AK  L LL+N E+NA+ KGLDV+ L I H   ++  K      RA GR  P+     ++E+
Sbjct:   52 IKGMTLKQAKAWLEDVVKLKRPIPIKTFKKKQAHHATPWEGWP--VAKWPVKVAKRYLQLLENLENNAKFKGLDVERLVIIHAAAHKGIKIPNIMPRAFGRATPFNEETVNVEI 163          
The following BLAST results are available for this feature:
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL22_ARCFU7.956e-1338.6050S ribosomal protein L22P OS=Archaeoglobus fulgid... [more]
RL22_METMJ1.039e-1239.3250S ribosomal protein L22P OS=Methanoculleus maris... [more]
RL22_SULTO1.357e-1234.4850S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_PYRAB1.772e-1238.7950S ribosomal protein L22P OS=Pyrococcus abyssi GN... [more]
RL22_PYRFU3.949e-1238.7950S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]
RL22_SULSO5.157e-1236.2150S ribosomal protein L22P OS=Sulfolobus solfatari... [more]
RL22_AERPE2.559e-1135.0950S ribosomal protein L22P OS=Aeropyrum pernix GN=... [more]
RL22_UNCMA5.702e-1135.5950S ribosomal protein L22P OS=Uncultured methanoge... [more]
RL22_METS57.447e-1132.4650S ribosomal protein L22P OS=Metallosphaera sedul... [more]
RL22_PYRCJ9.726e-1136.8450S ribosomal protein L22P OS=Pyrobaculum calidifo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00878 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00878 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623787 ID=BQ623787; Name=BQ623787; organism=Citrus sinensis; type=EST; length=572bp
CATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAGGATGTTA
TGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGGTGTTGGA
CGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGACGATGGCC
TGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCTGAGAGTA
ATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTCTCACATC
CAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCATGG
AAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCTTAT
CTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCAACT
AGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAGAGT
GCCCTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACCTTT
AATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATTTTGTTTA
TTTCATATTACGTCCCAGTTTA
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