BQ623787

Overview
NameBQ623787
Unique NameBQ623787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_META3 (50S ribosomal protein L22P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 2
Query:    2 IRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            I  + L KA  YL  V+  KQ +PF R    V      K ++    GR+P K++  IL +L+NA+ NAE KG++ + L I HI  N+    +R   RA GR +P      H+++ L
Sbjct:   37 ISGMKLDKAIAYLNRVIELKQVVPFKRHGKDV---PHKKGKYGWTAGRFPQKASTQILSVLENAKKNAEYKGMNTEKLRIKHISSNKGFTIKRHMPRAFGRASPKNQETVHVQVIL 149          
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Match: RL22_HALMA (50S ribosomal protein L22P OS=Haloarcula marismortui GN=rpl22p PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.726e-11
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:   23 KAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 349
            +A  YLE V+   Q +PF +   GVG  ++         GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  ++  +Q+ R  RA GR + + S    +EL L
Sbjct:   43 EAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELIL 148          
The following BLAST results are available for this feature:
BLAST of BQ623787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL22_META39.726e-1135.3450S ribosomal protein L22P OS=Methanococcus aeolic... [more]
RL22_HALMA9.726e-1135.7850S ribosomal protein L22P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00878 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00878 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623787 ID=BQ623787; Name=BQ623787; organism=Citrus sinensis; type=EST; length=572bp
CATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAGGATGTTA
TGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGGTGTTGGA
CGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGACGATGGCC
TGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCTGAGAGTA
ATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTCTCACATC
CAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCATGG
AAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCTTAT
CTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCAACT
AGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAGAGT
GCCCTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACCTTT
AATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATTTTGTTTA
TTTCATATTACGTCCCAGTTTA
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