BQ623799

Overview
NameBQ623799
Unique NameBQ623799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.072e-41
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  178 GGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 78/87 (89.66%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 261
            GGPLGEVTDP+YPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  181 GGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 79/87 (90.80%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    4 GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   38 GPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 75/88 (85.23%), Postives = 84/88 (95.45%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGE  DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  178 GGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.525e-40
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  176 GGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.525e-40
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  176 GGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.991e-40
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GG LGE  DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  179 GGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.131e-35
Identity = 71/86 (82.56%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 258
            GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  169 GGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.612e-35
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 258
            GGP GE  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  187 GGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.329e-35
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 258
            GGP GE  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  166 GGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
The following BLAST results are available for this feature:
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB26_PETSP3.072e-4188.64Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2_PHYPA1.167e-4089.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.167e-4090.80Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB215_PEA1.167e-4085.23Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ1.525e-4086.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.525e-4086.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH1.991e-4089.77Chlorophyll a-b binding protein type I, chloroplas... [more]
CB2_CHLMO1.131e-3582.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA5.612e-3579.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE7.329e-3580.23Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00890 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00890 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623799 ID=BQ623799; Name=BQ623799; organism=Citrus sinensis; type=EST; length=374bp
GGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCT
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