BQ623806

Overview
NameBQ623806
Unique NameBQ623806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:484..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.997e-42
Identity = 71/93 (76.34%), Postives = 82/93 (88.17%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLAL HAN+ + K+VF  W ETDFRTGE PWW
Sbjct:   86 GDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWW 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.194e-41
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTY+VV+ D T+  YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLALAHA + + K+ F PWTETDFRTG+ PWW
Sbjct:   86 GDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTETDFRTGKEPWW 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.010e-40
Identity = 72/95 (75.79%), Postives = 83/95 (87.37%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+  G+VVRGPAPLSLAL HA + E+ K+ F  WTETDFRT EAPWWA
Sbjct:   86 GDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA 180          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.320e-40
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTETDFRTG+APWWA
Sbjct:   86 GDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTGDAPWWA 179          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_NOSP7 (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.724e-40
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTY+VV+  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAH N+ + K+V  PWTETDFRTG+APWW+
Sbjct:   86 GDPTYIVVDSKEAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHTNVSDDKIVLTPWTETDFRTGDAPWWS 179          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.251e-40
Identity = 70/94 (74.47%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V  PWTETDFRTGE PWW+
Sbjct:   86 GDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTPWTETDFRTGEEPWWS 179          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.554e-40
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+V+RGPAPLSLAL HA +++  +V  PWTETDFRTGE PWW
Sbjct:   86 GDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.554e-40
Identity = 71/95 (74.74%), Postives = 84/95 (88.42%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA + ++ K+V   WTETDFRT E PWWA
Sbjct:   86 GDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP6 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.906e-39
Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:   86 GDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus (strain PCC 7942) GN=petC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.906e-39
Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYLVVE  + +  YGINAVCTHLGCVVPWN++ENKF CPCHGSQY+  G+VVRGPAPLSLALAH ++ + KV   PWTETDFRTG+ PWWA
Sbjct:   86 GDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179          
The following BLAST results are available for this feature:
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_TRIEI6.997e-4276.34Cytochrome b6-f complex iron-sulfur subunit OS=Tri... [more]
UCRI_CYAP41.194e-4175.27Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRI_SYNP21.010e-4075.79Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_NOSSP1.320e-4074.47Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_NOSP71.724e-4072.34Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRIA_ANAVT2.251e-4074.47Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_MASLA8.554e-4072.04Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRIB_SYNY38.554e-4074.74Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_SYNP61.906e-3973.40Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNE71.906e-3973.40Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00897 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00897 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623806 ID=BQ623806; Name=BQ623806; organism=Citrus sinensis; type=EST; length=605bp
GGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCAT
ATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAAT
TCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAA
CCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTC
ATGCCAACATTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACA
GATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGGTGC
CTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGTACT
GCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTACAAC
ATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGTAATCTTGGCAATCT
TGACAATTTTCTCTTATCCATTCATTCTTTGTATCTCAAAAATTCATACG
CTCAACAATGTAATGCTACAGCTTCAACGTTGGATATAAGTTTTTATCAT
TTATTAAGTAAAAATTAATTTCTATTATCTCATCAAAAAAAAAAAAAAAA
AAAAA
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