BQ623806

Overview
NameBQ623806
Unique NameBQ623806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:484..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.906e-39
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V   WTETDFRTGE PWW+
Sbjct:   86 GDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS 179          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.489e-39
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   85 GDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.489e-39
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQYN+ G+VVRGPAPLSLALA+  +EN  V    WTETDFRTGE PWW
Sbjct:   85 GDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGVNKFVCPCHGSQYNSTGKVVRGPAPLSLALANIAVENDNVFVSQWTETDFRTGEKPWW 177          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.544e-39
Identity = 69/94 (73.40%), Postives = 82/94 (87.23%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 280
            GD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+  G+VVRGPAPLSLALAH ++ E+G V F PWTETDFRT  APWW
Sbjct:  145 GDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWW 238          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPW (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH7803) GN=petC PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.241e-39
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+VE D  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WT+TDFRTGE PWWA
Sbjct:   85 GDPTYLIVEGDDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTDTDFRTGEKPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNSC (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9605) GN=petC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.457e-39
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY++ G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:   85 GDPTYLIVEGEDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDSTGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.235e-38
Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 280
            GD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+  G+VVRGPAPLSLALAH N+ E+G V F PWTETDFRT  APWW
Sbjct:  147 GDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWW 240          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_CHLRE (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.752e-38
Identity = 70/95 (73.68%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  WTETDFRTG  PWWA
Sbjct:  112 GDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAESGLVTFSTWTETDFRTGLEPWWA 206          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.694e-38
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 280
            GDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   86 GDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNPX (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain WH8102) GN=petC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.694e-38
Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++EN  V    WTETDFRTG+ PWWA
Sbjct:   85 GDPTYLIVEGPDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVENDNVFVSQWTETDFRTGDKPWWA 178          
The following BLAST results are available for this feature:
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_ANASP1.906e-3973.40Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_PROMM2.489e-3974.19Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM32.489e-3974.19Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_CYAPA5.544e-3973.40Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRI_SYNPW7.241e-3972.34Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNSC9.457e-3971.28Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIB_CYAPA1.235e-3873.40Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRIA_CHLRE2.752e-3873.68Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_THEEB4.694e-3871.28Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNPX4.694e-3871.28Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00897 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00897 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623806 ID=BQ623806; Name=BQ623806; organism=Citrus sinensis; type=EST; length=605bp
GGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCAT
ATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAAT
TCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAA
CCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTC
ATGCCAACATTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACA
GATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGGTGC
CTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGTACT
GCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTACAAC
ATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGTAATCTTGGCAATCT
TGACAATTTTCTCTTATCCATTCATTCTTTGTATCTCAAAAATTCATACG
CTCAACAATGTAATGCTACAGCTTCAACGTTGGATATAAGTTTTTATCAT
TTATTAAGTAAAAATTAATTTCTATTATCTCATCAAAAAAAAAAAAAAAA
AAAAA
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