BQ623806

Overview
NameBQ623806
Unique NameBQ623806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.694e-38
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 280
            GDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   86 GDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROMT (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL2A) GN=petC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   85 GDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROM1 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain NATL1A) GN=petC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTYL+VE +  + SYGINA+CTHLGCVVPWNS  NK++CPCHGSQY++ G+VVRGPAPLSLA+AH +IE+ +V+   WTETDFRTG  PWW
Sbjct:   85 GDPTYLIVEGEDAITSYGINAICTHLGCVVPWNSGANKYMCPCHGSQYDSTGKVVRGPAPLSLAIAHVSIEDDQVLVSQWTETDFRTGTDPWW 177          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.046e-37
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTYL+VE  + + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLALAH ++E+ KV    W ETDFRTGE PWW
Sbjct:   85 GDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAHIDVEDDKVFVSQWAETDFRTGEKPWW 177          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.366e-37
Identity = 69/95 (72.63%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  W+ETDFRTG  PWWA
Sbjct:  112 GDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.784e-37
Identity = 66/94 (70.21%), Postives = 77/94 (81.91%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +++N  V    WTETDFRTGE PWW+
Sbjct:   85 GDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTGEKPWWS 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.784e-37
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V+   ++  YGINA+CTHLGCVVPWN+  NKF+CPCHGSQY+  G+VVRGPAPLSLALAH N+EN  V    W+ETDFRT E PWWA
Sbjct:   85 GDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVENDNVFVSQWSETDFRTDEKPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.784e-37
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V+ D  + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLAL H +I++  V+   WTETDFRTG+ PWWA
Sbjct:   85 GDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTHIDIDDDNVLVSQWTETDFRTGDKPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS9 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9902) GN=petC PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.777e-37
Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++E+  V    W+ETDFRTG+ PWWA
Sbjct:   85 GDPTYLIVEGADAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVEDDNVFVSEWSETDFRTGDKPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.777e-37
Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 2
Query:    2 GDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH   +NGK++  PWTETDFRTGE PWWA
Sbjct:  158 GDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWWA 252          
The following BLAST results are available for this feature:
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_SYNEL4.694e-3871.28Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMT6.130e-3869.89Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM16.130e-3869.89Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM41.046e-3769.89Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_VOLCA1.366e-3772.63Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNS31.784e-3770.21Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNR31.784e-3769.15Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMA1.784e-3768.09Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNS96.777e-3769.15Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_BIGNA6.777e-3770.53Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00897 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00897 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623806 ID=BQ623806; Name=BQ623806; organism=Citrus sinensis; type=EST; length=605bp
GGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCAT
ATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAAT
TCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAA
CCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTC
ATGCCAACATTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACA
GATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGGTGC
CTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGTACT
GCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTACAAC
ATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGTAATCTTGGCAATCT
TGACAATTTTCTCTTATCCATTCATTCTTTGTATCTCAAAAATTCATACG
CTCAACAATGTAATGCTACAGCTTCAACGTTGGATATAAGTTTTTATCAT
TTATTAAGTAAAAATTAATTTCTATTATCTCATCAAAAAAAAAAAAAAAA
AAAAA
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