BQ623806

Overview
NameBQ623806
Unique NameBQ623806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.393e-36
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   85 GDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.393e-36
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   85 GDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.737e-36
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   85 GDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.493e-36
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   85 GDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.493e-36
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++++  V+   W+ETDFRT E PWWA
Sbjct:   85 GDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.493e-36
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 283
            GDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   85 GDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.850e-26
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR 259
            GDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A ++   V F PW   DFR
Sbjct:   86 GDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 52/98 (53.06%), Postives = 66/98 (67.35%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFR-----TGEAPWW 280
            GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  A + + KV+  PWTE DFR       + P+W
Sbjct:   87 GDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFRCTDLWCNKDPYW 184          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIC_ANASP (Cytochrome b6-f complex iron-sulfur subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=petC3 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            G+PTYL+V++D TL   G+   CTHLGC  PWN  + +F CPCHGS+Y   G VVRGPAPL L +    + +  ++  PWTETD RTG+ PWW
Sbjct:   85 GEPTYLIVKEDHTLDRIGLVDNCTHLGCTFPWNPLDQQFQCPCHGSRYAPDGSVVRGPAPLPLKIVQVAVIDNSILISPWTETDPRTGKKPWW 177          
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    2 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 280
            GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    + + ++   PWT+ D RTGE PWW
Sbjct:   85 GDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
The following BLAST results are available for this feature:
BLAST of BQ623806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROMS4.393e-3667.02Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM94.393e-3667.02Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM25.737e-3667.02Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP7.493e-3664.89Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM57.493e-3664.89Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM07.493e-3667.02Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_SYNJA1.850e-2660.47Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_GLOVI2.416e-2653.06Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]
UCRIC_ANASP2.416e-2652.69Cytochrome b6-f complex iron-sulfur subunit 3 OS=A... [more]
UCRIA_SYNY32.416e-2652.69Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00897 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00897 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623806 ID=BQ623806; Name=BQ623806; organism=Citrus sinensis; type=EST; length=605bp
GGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCATCAT
ATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGGAAT
TCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAATAA
CCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGGCTC
ATGCCAACATTGAAAATGGTAAGGTAGTCTTCGTTCCATGGACGGAAACA
GATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGGTGC
CTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGTACT
GCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTACAAC
ATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGTAATCTTGGCAATCT
TGACAATTTTCTCTTATCCATTCATTCTTTGTATCTCAAAAATTCATACG
CTCAACAATGTAATGCTACAGCTTCAACGTTGGATATAAGTTTTTATCAT
TTATTAAGTAAAAATTAATTTCTATTATCTCATCAAAAAAAAAAAAAAAA
AAAAA
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