BQ623811

Overview
NameBQ623811
Unique NameBQ623811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.783e-47
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 58.151 bits (139), Expect = 1.783e-47
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  162 AVQVVLMGAVEGYRIAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.838e-47
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   44 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

HSP 2 Score: 62.003 bits (149), Expect = 1.838e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:   13 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 41
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.324e-47
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 61.6178 bits (148), Expect = 2.324e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  163 ACQVVLMGAVEGYRVAGGPLGEVVDPLYP 191
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.324e-47
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 62.003 bits (149), Expect = 2.324e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  162 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.324e-47
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 62.003 bits (149), Expect = 2.324e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  162 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.324e-47
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 62.003 bits (149), Expect = 2.324e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  162 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.029e-47
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 61.2326 bits (147), Expect = 3.029e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRVAGGPLGEVIDPLYP 192
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.030e-47
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 311
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  190 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261

HSP 2 Score: 62.003 bits (149), Expect = 3.030e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  159 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 187
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.948e-47
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 61.2326 bits (147), Expect = 3.948e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  163 ACQVVLMGAVEGYRVAGGPLGEVIDPLYP 191
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.948e-47
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 62.003 bits (149), Expect = 3.948e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 192
The following BLAST results are available for this feature:
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_ORYSJ1.783e-47100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2D_SOLLC1.838e-4795.89Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB21_TOBAC2.324e-4795.89Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2C_SOLLC2.324e-4795.89Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2B_SOLLC2.324e-4795.89Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SOLLC2.324e-4795.89Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_PETSP3.029e-4795.89Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_MAIZE3.030e-4795.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PETSP3.948e-4795.89Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2F_SOLLC3.948e-4794.52Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00902 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623811 ID=BQ623811; Name=BQ623811; organism=Citrus sinensis; type=EST; length=425bp
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCTT
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