BQ623811

Overview
NameBQ623811
Unique NameBQ623811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.948e-47
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 62.003 bits (149), Expect = 3.948e-47
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.950e-47
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 58.151 bits (139), Expect = 3.950e-47
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  158 AVQVVLMGAVEGYRIAGGPLGEVVDPLYP 186
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.146e-47
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:   99 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  194 FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 61.2326 bits (147), Expect = 5.146e-47
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGA+EGYR+AGGPLGEV DPLYP
Sbjct:  162 ACQVVLMGAIEGYRVAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.146e-47
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267

HSP 2 Score: 61.6178 bits (148), Expect = 5.146e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQV+LMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  164 ACQVILMGAVEGYRIAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.703e-47
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 3 
Query:   99 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            FDPLGLADDP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  207 FDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 62.003 bits (149), Expect = 6.703e-47
Identity = 25/29 (86.21%), Postives = 29/29 (100.00%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQV+LMGA+EGYR+AGGPLGEVTDP+YP
Sbjct:  175 ACQVILMGAIEGYRVAGGPLGEVTDPIYP 203
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.741e-47
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 58.5362 bits (140), Expect = 8.741e-47
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AG PLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRVAGEPLGEVVDPLYP 192
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.741e-47
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 61.6178 bits (148), Expect = 8.741e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  164 ACQVVLMGAVEGYRVAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.742e-47
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 61.6178 bits (148), Expect = 8.742e-47
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  161 ACQVVLMGAVEGYRVAGGPLGEVVDPLYP 189
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.935e-46
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  197 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

HSP 2 Score: 57.7658 bits (138), Expect = 1.935e-46
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  166 ATQVILMGAVEGYRIAGGPLGEVVDPLYP 194
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.522e-46
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  191 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263

HSP 2 Score: 58.9214 bits (141), Expect = 2.522e-46
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  160 ATQVILMGAVEGYRIAGGPLGEVTDPIYP 188
The following BLAST results are available for this feature:
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2E_SOLLC3.948e-4794.52Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB22_ORYSJ3.950e-4798.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_MAIZE5.146e-4795.83Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_SPIOL5.146e-4795.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PYRPY6.703e-4794.44Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_NICPL8.741e-4797.26Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_TOBAC8.741e-4794.52Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU8.742e-4795.89Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PEA1.935e-4695.89Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_SOYBN2.522e-4695.89Chlorophyll a-b binding protein 3, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00902 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623811 ID=BQ623811; Name=BQ623811; organism=Citrus sinensis; type=EST; length=425bp
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCTT
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