BQ623811

Overview
NameBQ623811
Unique NameBQ623811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:577..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.287e-46
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 58.5362 bits (140), Expect = 3.287e-46
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AG PLGEV DPLYP
Sbjct:  163 ACQVVLMGAVEGYRVAGEPLGEVVDPLYP 191
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.291e-46
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  173 SFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

HSP 2 Score: 58.9214 bits (141), Expect = 3.291e-46
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  142 ATQVILMGAVEGYRIAGGPLGEVTDPIYP 170
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.283e-46
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  196 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268

HSP 2 Score: 57.7658 bits (138), Expect = 4.283e-46
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  165 ATQVILMGAVEGYRIAGGPLGEVVDPLYP 193
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.583e-46
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 62.003 bits (149), Expect = 5.583e-46
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  162 ACQVVLMGAVEGYRIAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 6.054e-45
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  193 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265

HSP 2 Score: 60.077 bits (144), Expect = 6.054e-45
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQV+LMGAVEGYR+AGGPLGEV DP+YP
Sbjct:  162 ACQVILMGAVEGYRVAGGPLGEVEDPIYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.747e-44
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  184 SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256

HSP 2 Score: 58.9214 bits (141), Expect = 1.747e-44
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  153 ATQVILMGAVEGYRIAGGPLGEVTDPIYP 181
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.973e-44
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  156 SFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228

HSP 2 Score: 57.7658 bits (138), Expect = 2.973e-44
Identity = 26/29 (89.66%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  125 ATQVILMGAVEGYRIAGGPLGEVVDPLYP 153
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.865e-44
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  195 SFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267

HSP 2 Score: 57.7658 bits (138), Expect = 3.865e-44
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQV+LMGAVEGYR+AGGPLG V DPLYP
Sbjct:  164 ACQVLLMGAVEGYRVAGGPLGVVVDPLYP 192
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.865e-44
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  194 SFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266

HSP 2 Score: 61.6178 bits (148), Expect = 3.865e-44
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYRIAGGPLGE+ DPLYP
Sbjct:  163 ACQVVLMGAVEGYRIAGGPLGEIVDPLYP 191
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.865e-44
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 56.9954 bits (136), Expect = 3.865e-44
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMGAVEGYR+AGGPLGE+ DPLYP
Sbjct:  161 ATQVILMGAVEGYRVAGGPLGEIVDPLYP 189
The following BLAST results are available for this feature:
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB25_NICPL3.287e-4694.52Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_SOYBN3.291e-4695.89Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB28_PEA4.283e-4694.52Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_MAIZE5.583e-4691.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU6.054e-4590.41Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_SOYBN1.747e-4491.78Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA2.973e-4491.78Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_PETSP3.865e-4490.41Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT3.865e-4489.04Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_APIGR3.865e-4491.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00902 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623811 ID=BQ623811; Name=BQ623811; organism=Citrus sinensis; type=EST; length=425bp
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCTT
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