BQ623811

Overview
NameBQ623811
Unique NameBQ623811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 5.036e-44
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265

HSP 2 Score: 53.9138 bits (128), Expect = 5.036e-44
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMG VEGYR+ GGPLGE  DP+YP
Sbjct:  162 ACQVVLMGFVEGYRVGGGPLGEGLDPIYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.037e-44
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  192 SFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264

HSP 2 Score: 53.5286 bits (127), Expect = 5.037e-44
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLY 85
            ACQVVLMGAVEGY +AGG LGEV DPLY
Sbjct:  161 ACQVVLMGAVEGYHVAGGRLGEVVDPLY 188
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.470e-43
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150

HSP 2 Score: 54.6842 bits (130), Expect = 1.470e-43
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMG +EGYR+ GGPLGE  DPLYP
Sbjct:   47 ACQVVLMGLIEGYRVGGGPLGEGLDPLYP 75
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.893e-43
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  192 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264

HSP 2 Score: 50.8322 bits (120), Expect = 1.893e-43
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG +EGYR+ GGPLGE  DPLYP
Sbjct:  161 ATQVVLMGLIEGYRVGGGPLGEGLDPLYP 189
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.112e-43
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265

HSP 2 Score: 50.8322 bits (120), Expect = 7.112e-43
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMG VEGYR+ GGPLGE  D +YP
Sbjct:  162 ACQVVLMGFVEGYRVGGGPLGEGLDKIYP 190
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.573e-42
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 311
            +FDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  196 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267

HSP 2 Score: 62.7734 bits (151), Expect = 1.573e-42
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMGAVEGYR+AGGPLGEVTDP+YP
Sbjct:  165 ACQVVLMGAVEGYRVAGGPLGEVTDPIYP 193
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.574e-42
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 46.9802 bits (110), Expect = 1.574e-42
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAG-GPLGEVTDPLYP 88
            A QV+LMGAVEGYR+AG GPLGE  D LYP
Sbjct:  162 ATQVILMGAVEGYRVAGEGPLGEAEDLLYP 191
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.054e-42
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  165 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237

HSP 2 Score: 46.9802 bits (110), Expect = 2.054e-42
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG VEGYR+ GGPLGE  D +YP
Sbjct:  134 ASQVVLMGFVEGYRVGGGPLGEGLDKIYP 162
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.537e-42
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 46.9802 bits (110), Expect = 4.537e-42
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAG-GPLGEVTDPLYP 88
            A QV+LMGAVEGYR+AG GPLGE  D LYP
Sbjct:  163 ATQVILMGAVEGYRVAGNGPLGEAEDLLYP 192
[Close]
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.537e-42
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 3 
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPLGLA DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 46.9802 bits (110), Expect = 4.537e-42
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:    2 ACQVVLMGAVEGYRIAG-GPLGEVTDPLYP 88
            A QV+LMGAVEGYR+AG GPLGE  D LYP
Sbjct:  163 ATQVILMGAVEGYRVAGNGPLGEAEDLLYP 192
The following BLAST results are available for this feature:
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_GOSHI5.036e-4494.52Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB48_MAIZE5.037e-4493.15Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_PINSY1.470e-4394.52Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_LEMGI1.893e-4394.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC7.112e-4393.15Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2_PHYPA1.573e-4287.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SINAL1.574e-4295.89Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_SOLLC2.054e-4294.52Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_ARATH4.537e-4293.15Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH4.537e-4293.15Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00902 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623811 ID=BQ623811; Name=BQ623811; organism=Citrus sinensis; type=EST; length=425bp
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCTT
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