BQ623811

Overview
NameBQ623811
Unique NameBQ623811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.912e-42
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          

HSP 2 Score: 46.9802 bits (110), Expect = 5.912e-42
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG +EGYR+ GGPLGE  D +YP
Sbjct:  162 ASQVVLMGLIEGYRVGGGPLGEGLDKIYP 190          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.703e-42
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          

HSP 2 Score: 48.521 bits (114), Expect = 7.703e-42
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            ACQVVLMG +EGYR+ GG LGE  DPL P
Sbjct:  163 ACQVVLMGLIEGYRVGGGTLGEGLDPLLP 191          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.308e-41
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          

HSP 2 Score: 47.3654 bits (111), Expect = 1.308e-41
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG VEGYR+ GGPLGE  D +YP
Sbjct:  162 AAQVVLMGFVEGYRVGGGPLGEGLDKIYP 190          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.401e-41
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  193 AFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          

HSP 2 Score: 50.8322 bits (120), Expect = 6.401e-41
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG VEGYR+ GGPLGE  DPLYP
Sbjct:  162 ATQVVLMGFVEGYRVGGGPLGEGLDPLYP 190          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.341e-41
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          

HSP 2 Score: 46.595 bits (109), Expect = 8.341e-41
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG VEGYR+ GGPLGE  D +YP
Sbjct:  160 AVQVVLMGFVEGYRVGGGPLGEGLDKVYP 188          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 8.341e-41
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          

HSP 2 Score: 46.595 bits (109), Expect = 8.341e-41
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG VEGYR+ GGPLGE  D +YP
Sbjct:  160 AVQVVLMGFVEGYRVGGGPLGEGLDKVYP 188          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.448e-40
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 314
            +FDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          

HSP 2 Score: 46.9802 bits (110), Expect = 1.448e-40
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAG-GPLGEVTDPLYP 88
            A QV+LMGAVEGYR+AG GPLGE  D LYP
Sbjct:   20 ATQVILMGAVEGYRVAGDGPLGEAEDLLYP 49          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.277e-36
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 308
            AFDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  202 AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          

HSP 2 Score: 48.521 bits (114), Expect = 4.277e-36
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG VEGYR+ GGP GE  DPLYP
Sbjct:  171 AVQVVLMGLVEGYRVNGGPAGEGLDPLYP 199          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.577e-36
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 308
            +FDPLGLADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  184 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          

HSP 2 Score: 48.1358 bits (113), Expect = 5.577e-36
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QVVLMG +EGYR+ GGP GE  DPLYP
Sbjct:  153 AVQVVLMGLIEGYRVNGGPAGEGLDPLYP 181          
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.623e-35
Identity = 57/71 (80.28%), Postives = 64/71 (90.14%), Query Frame = 3
Query:   96 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 308
            +FDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  181 SFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          

HSP 2 Score: 47.7506 bits (112), Expect = 4.623e-35
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 2
Query:    2 ACQVVLMGAVEGYRIAGGPLGEVTDPLYP 88
            A QV+LMG +EGYR+ GGP GE  DPLYP
Sbjct:  150 AVQVILMGLIEGYRVNGGPAGEGLDPLYP 178          
The following BLAST results are available for this feature:
BLAST of BQ623811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB23_TOBAC5.912e-4294.52Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PINTH7.703e-4294.52Chlorophyll a-b binding protein type I, chloroplas... [more]
CB26_PETSP1.308e-4193.15Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB215_PEA6.401e-4186.30Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ8.341e-4190.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI8.341e-4190.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.448e-4091.78Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2_DUNSA4.277e-3681.69Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO5.577e-3683.10Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE4.623e-3580.28Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00902 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00902 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623811 ID=BQ623811; Name=BQ623811; organism=Citrus sinensis; type=EST; length=425bp
GGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTG
GAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCTT
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