BQ623826

Overview
NameBQ623826
Unique NameBQ623826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.576e-14
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATVKRLK 353
            ++R+D A  G+ P H HP ASEI+ V+ G +  GF++++   +  K L KGD+  FP+GL+HFQ N     A    +F+S  PG Q    +LF   L   ++ ++  L    VK++K
Sbjct:   92 MSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLI-AKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLF-GALPDDILAKSFQLKHKQVKKIK 206          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL811_ORYSJ (Germin-like protein 8-11 OS=Oryza sativa subsp. japonica GN=Os08g0190100 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSA-NTVYVKTLKKGDIMIFPQGLLHFQVNSGA-DGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKA 356
            +AR+D A  G  P HTHP A+EIL V+ G +  GF++S+  N  + K L KGD+ +FP GL+HFQ N      A+   + +S NPG      A+F +   +S  ++ +   ++  T+  L+A
Sbjct:   95 IARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPDNKFFSKVLNKGDVFVFPVGLIHFQFNPNPYKPAVAIAALSSQNPGAITIANAVFGSKPPISDDVLAKAFQVEKGTIDWLQA 216          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN 290
            ++R+D A GG+ P H HP ASE + V+ G +  GF++++   +  K + KGD+ +FP+ LLHFQ N     A    +F+S  PG Q+   +LF +N
Sbjct:   95 ISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLIS-KHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSN 189          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.260e-13
Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 3
Query:    9 RLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISS--SANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN--LSSQLVEQTTFLDDATVKRLKAILGG 368
            R+D A GG  P H HP A+EI +V+ G +  G + S  S N +Y + ++ G+  + P+GL+HFQ N G   A   V FNS +P +      LF +N  +   ++ +   ++   V+ LK+   G
Sbjct:   99 RVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELLKSKFAG 222          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.617e-12
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 3
Query:    3 LARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALF 281
            +ARLD    GV+P H HP ASE+ + + G +  GF+ +S   V+ + L  G+  +FP+GL+HF  N      AL     +S NPG QI   + F
Sbjct:   94 MARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGR-VFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186          
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.603e-12
Identity = 40/126 (31.75%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    3 LARLDLAK-GGVIPIHTHPAASEILLVVHGCITAGFISSSA----NTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANN---LSSQLVEQTTFLDDATVKRLKA 356
            +AR+D A  GG  P H+HP A+EIL V  G +  GF+ ++A    + +  + + KG + +FP+GLLH++ + G   A+   +F+S  PG Q    ALF ++   + + ++ +   +D   V+ +K+
Sbjct:  105 MARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSSSPAVPTDVLARAFQVDGGVVENIKS 230          
The following BLAST results are available for this feature:
BLAST of BQ623826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL25_ARATH8.576e-1435.90Probable germin-like protein subfamily 2 member 5 ... [more]
GL811_ORYSJ1.120e-1336.07Germin-like protein 8-11 OS=Oryza sativa subsp. ja... [more]
GL23_ARATH1.120e-1338.54Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GER3_WHEAT7.260e-1333.06Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL11_ARATH1.617e-1238.30Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL14_ORYSJ3.603e-1231.75Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01005 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01005 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623826 ID=BQ623826; Name=BQ623826; organism=Citrus sinensis; type=EST; length=551bp
GCTTGGCACGCCTAGATCTTGCAAAGGGTGGCGTAATCCCAATCCACACT
CATCCAGCTGCTTCCGAAATCCTTCTTGTTGTGCATGGCTGCATAACTGC
CGGGTTCATTTCCTCTTCAGCTAACACTGTTTACGTAAAGACGCTTAAGA
AGGGAGATATCATGATCTTTCCACAAGGGTTGTTGCATTTTCAAGTAAAT
TCCGGTGCGGACGGAGCCCTCGGTTTTGTTAGCTTCAACAGCCCGAATCC
TGGACTCCAAATCACCGATTTCGCCTTATTTGCTAACAACTTGTCTTCCC
AATTGGTGGAGCAGACCACTTTCCTTGACGATGCTACGGTGAAGAGGCTC
AAGGCTATCCTTGGTGGCACCGGCTAGGCTTATTAGTTACCACATTCTTC
ATTTGTAGTTTTGAGTTCTTAATTTCATTTAGTTGCTAATGTTTTTGATT
GTTGGAATTCACGAGTTAGTATTTTCTGTTCTCACTTCCCCTATCTTTTC
TTCTGAATAAATAAAATTTCTCTCATTTAAAAAAAAAAAAAAAAAAACTC
C
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