BQ623827

Overview
NameBQ623827
Unique NameBQ623827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1975 contig Csv1_Contig1975:361..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.158e-15
Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 3
Query:   87 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFL--ASFLLGWGI---TIGAGLASYPI 614
            F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LLG G    T G  LASYP+
Sbjct:  238 FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISGSMAGATAQT----FIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQ-LASYPL 406          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.975e-15
Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 3
Query:   87 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFL--ASFLLGWGI---TIGAGLASYPI 614
            F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LLG G    T G  LASYP+
Sbjct:  238 FQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSGSMAGATAQT----FIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVMVLLGCGALSSTCGQ-LASYPL 406          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 58/181 (32.04%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   87 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLAS--FLLGWGI---TIGAGLASYPI 614
            F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA        G   Q++G+ D  KK LK +G    Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LLG G    T G  LASYP+
Sbjct:  236 FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISGSMAGATAQT----FIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQ-LASYPL 404          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.503e-15
Identity = 54/176 (30.68%), Postives = 86/176 (48.86%), Query Frame = 3
Query:   99 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLASFLL----GWGITIGAGLASYPI 614
            VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+  + +GII Y G+   +Y++LK   L +  +DS     L+    G   +    LASYP+
Sbjct:  241 VKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTS----IYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLVLLGCGTASSTCGQLASYPL 405          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 53/176 (30.11%), Postives = 83/176 (47.16%), Query Frame = 3
Query:   99 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL----TDGMQDSFLASFLLGWGITIGAGLASYPI 614
            VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  KK ++ +G+   Y+G+  + +GII Y G+   +Y++LK   L    TD      L     G   +    LASYP+
Sbjct:  241 VKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLKTFWLQNYATDSANPGVLVLLGCGTASSTCGQLASYPL 405          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 3
Query:   99 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLAS--FLLGWGITIG--AGLASYPI 614
            VK+ G+ SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F                 +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+  + +GII Y G+   +Y++LK   L +  +DS       LLG G        LASYP+
Sbjct:  241 VKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTS----IYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQKEGILAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNYAKDSANPGVLVLLGCGTVSSTCGQLASYPL 405          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 60/181 (33.15%), Postives = 89/181 (49.17%), Query Frame = 3
Query:   87 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFL--ASFLLGWGI---TIGAGLASYPI 614
            F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F                F+Y ++  +TRLA     AK G   Q++G+    KK LK +G    Y+G+  + +GII Y G+   +Y+ LK   L +  +DS       LL  G    T G  LASYP+
Sbjct:  236 FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISGSMAGATAQT----FIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLSCGALSSTCGQ-LASYPL 404          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = 3
Query:   87 FGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDR-DGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVLTDGMQDSFLAS--FLLGWG-ITIGAG-LASYPI 614
            F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L +    +   + ++ AG+              +Y ++  +TRL       +K G  Q++G+ D  KK L+ +G+   Y+G+  + +GII Y G+   +Y++LK   L+   +D+       LLG G I+   G LASYP+
Sbjct:  239 FKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLSKDGGKVQSHERFMAGSLAGATAQTA-----IYPMEVMKTRLT-----LRKTG--QYSGMFDCAKKILRKEGVKAFYKGYVPNILGIIPYAGIDLAVYETLKNTWLSHYAKDTANPGVLVLLGCGTISSTCGQLASYPL 407          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCM2A_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-A OS=Danio rerio GN=slc25a25a PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 55/193 (28.50%), Postives = 88/193 (45.60%), Query Frame = 3
Query:   60 HPYKGISDCF----GRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL----TDGMQDSFLASFLLGWGITIGAGLASYPI 614
            H  +G S C      + +K+ G+ SLWRGN  NVI+  P  AL F   +  KR+    ++  G  + F                 +Y ++  +TRLA      +K G  Q+ G+ D  K  LK++G++  Y+G+  + +GII Y G+   +Y++LK   L    T+            G   +    LASYP+
Sbjct:  217 HGCQGKSMCLMSGLTQMIKEGGVRSLWRGNGINVIKIAPETALKFMAYEQIKRVMGSSQETLGISERFVAGSLAGVIAQST----IYPMEVLKTRLA-----LRKTG--QYKGISDCAKHILKTEGMSAFYKGYVPNMLGIIPYAGIDLAVYETLKNTWLQRYGTENADPGVFVLLACGTVSSTCGQLASYPL 398          
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Match: SCM2B_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 50/185 (27.03%), Postives = 82/185 (44.32%), Query Frame = 3
Query:   72 GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVYRGLYFGMYDSLKPVVL----TDGMQDSFLASFLLGWGITIGAGLASYPI 614
            GI+  F + +++ G+ SLWRGN  NV++  P  A+ F   +  KRL    ++  G  +                   +Y ++  +TRLA        G   Q++G+ D  K   K +G+   Y+G+  + +GII Y G+   +Y++LK   L    TD            G   +    LASYP+
Sbjct:  225 GIAGGFTQMIREGGLRSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSNQETLGILERLVSGSLAGAIAQSS----IYPMEVLKTRLA-------LGRTGQYSGIADCAKHIFKKEGMTAFYKGYIPNMLGIIPYAGIDLAVYETLKNSWLQRFATDSADPGVFVLLACGTMSSTCGQLASYPL 398          
The following BLAST results are available for this feature:
BLAST of BQ623827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SCMC1_HUMAN1.158e-1533.15Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_BOVIN1.975e-1533.15Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT5.745e-1532.04Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA7.503e-1530.68Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_XENTR1.672e-1430.11Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA1.672e-1431.25Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE2.851e-1433.15Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_DANRE8.296e-1430.39Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2A_DANRE7.023e-1328.50Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM2B_DANRE9.172e-1327.03Calcium-binding mitochondrial carrier protein SCaM... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01006 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01006 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623827 ID=BQ623827; Name=BQ623827; organism=Citrus sinensis; type=EST; length=618bp
AGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGATCAAGAGTGGT
CGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTGGTAGAACTGT
TAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACTGCCAATGTTA
TCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAAGGATTACTTT
AAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACTGGAAGTGGTT
TGCTGGGAACTTGGCATCTGGTGGGGCTGCTGGTGCTTCATCGCTTCTTT
TTGTGTATTCGCTTGACTATGCAAGAACACGTTTGGCAAATGATGCTAAG
GCAGCTAAAAAGGGTGGGGAAAGGCAGTTTAATGGTTTGATTGATGTCTA
CAAGAAGACTCTGAAATCTGATGGCATTGCTGGGCTCTACCGTGGATTCA
GCATCTCATGTGTTGGAATTATAGTGTATCGTGGGCTCTACTTTGGAATG
TACGATTCTCTAAAACCTGTGGTGTTGACTGATGGGATGCAGGATAGTTT
CTTGGCTAGCTTCTTACTTGGCTGGGGAATCACAATTGGTGCTGGTTTGG
CTTCTTACCCAATTGATA
back to top